Cluster: Rep_479_CGC63
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_479
- CGC Family ID: CGCFAM_01055
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_479_c_388 | Rep_479_c_388_2 | 968 | 4954 | + | 9.A.25.1.1 |
| pfam | Rep_479_c_388 | Rep_479_c_388_3 | 4961 | 5710 | + | DAHP_synth_1 |
| TC | Rep_479_c_388 | Rep_479_c_388_4 | 5718 | 8126 | + | 9.B.14.3.1 |
| NULL(UNKNOWN) | Rep_479_c_388 | Rep_479_c_388_5 | 8158 | 8352 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_479_c_388 | Rep_479_c_388_6 | 8469 | 9695 | + | GH88 |
| CAZyme | Rep_479_c_388 | Rep_479_c_388_7 | 9713 | 12160 | + | GH2 |
| CAZyme | Rep_479_c_388 | Rep_479_c_388_8 | 12162 | 13328 | + | PL38 |
| CAZyme | Rep_479_c_388 | Rep_479_c_388_9 | 13340 | 15508 | + | PL8_3 |
| CAZyme | Rep_479_c_388 | Rep_479_c_388_10 | 15690 | 17243 | + | PL29 |
| TC | Rep_479_c_388 | Rep_479_c_388_11 | 17498 | 20644 | + | 1.B.14.6.1 |
| TC | Rep_479_c_388 | Rep_479_c_388_12 | 20666 | 22471 | + | 8.A.46.1.3 |
Gene ID: Rep_479_c_388_2
Type: TC
Location: 968 - 4954 (+)
Type: TC
Location: 968 - 4954 (+)
Gene ID: Rep_479_c_388_3
Type: pfam
Location: 4961 - 5710 (+)
Type: pfam
Location: 4961 - 5710 (+)
Gene ID: Rep_479_c_388_4
Type: TC
Location: 5718 - 8126 (+)
Type: TC
Location: 5718 - 8126 (+)
Gene ID: Rep_479_c_388_5
Type:
Location: 8158 - 8352 (-)
Type:
Location: 8158 - 8352 (-)
Gene ID: Rep_479_c_388_6
Type: CAZyme
Location: 8469 - 9695 (+)
Type: CAZyme
Location: 8469 - 9695 (+)
Gene ID: Rep_479_c_388_7
Type: CAZyme
Location: 9713 - 12160 (+)
Type: CAZyme
Location: 9713 - 12160 (+)
Gene ID: Rep_479_c_388_8
Type: CAZyme
Location: 12162 - 13328 (+)
Type: CAZyme
Location: 12162 - 13328 (+)
Gene ID: Rep_479_c_388_9
Type: CAZyme
Location: 13340 - 15508 (+)
Type: CAZyme
Location: 13340 - 15508 (+)
Gene ID: Rep_479_c_388_10
Type: CAZyme
Location: 15690 - 17243 (+)
Type: CAZyme
Location: 15690 - 17243 (+)
Gene ID: Rep_479_c_388_11
Type: TC
Location: 17498 - 20644 (+)
Type: TC
Location: 17498 - 20644 (+)
Gene ID: Rep_479_c_388_12
Type: TC
Location: 20666 - 22471 (+)
Type: TC
Location: 20666 - 22471 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.