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Cluster: Rep_479_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_479_c_342 Rep_479_c_342_13 18201 18779 - 3.D.6.1.2
TC Rep_479_c_342 Rep_479_c_342_14 18851 19417 - 3.D.6.1.2
TC Rep_479_c_342 Rep_479_c_342_15 19451 20083 - 3.D.6.1.2
TC Rep_479_c_342 Rep_479_c_342_16 20110 21105 - 3.D.6.1.2
TC Rep_479_c_342 Rep_479_c_342_17 21112 22449 - 3.D.6.1.2
TC Rep_479_c_342 Rep_479_c_342_18 22598 23623 - 3.D.6.1.2
pfam Rep_479_c_342 Rep_479_c_342_19 23661 24080 - RseC_MucC
TC Rep_479_c_342 Rep_479_c_342_20 24753 26192 - 9.B.168.1.2
peptidase Rep_479_c_342 Rep_479_c_342_21 26399 28012 + C26.964
TC Rep_479_c_342 Rep_479_c_342_22 28052 29899 + 2.A.9.3.4
TC Rep_479_c_342 Rep_479_c_342_23 30119 31450 + 2.A.66.1.10
peptidase Rep_479_c_342 Rep_479_c_342_24 31519 33639 + S09.UPC
TC Rep_479_c_342 Rep_479_c_342_25 33725 34312 - 9.B.18.1.3
pfam Rep_479_c_342 Rep_479_c_342_26 34309 35532 - Aminotran_1_2 | DegT_DnrJ_EryC1
CAZyme Rep_479_c_342 Rep_479_c_342_27 36081 37091 - GT2
NULL(UNKNOWN) Rep_479_c_342 Rep_479_c_342_28 37102 38100 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_479_c_342 Rep_479_c_342_29 38090 39232 - Wzy_C
CAZyme Rep_479_c_342 Rep_479_c_342_30 39245 40324 - GT4
Gene ID: Rep_479_c_342_13
Type: TC
Location: 18201 - 18779 (-)
Gene ID: Rep_479_c_342_14
Type: TC
Location: 18851 - 19417 (-)
Gene ID: Rep_479_c_342_15
Type: TC
Location: 19451 - 20083 (-)
Gene ID: Rep_479_c_342_16
Type: TC
Location: 20110 - 21105 (-)
Gene ID: Rep_479_c_342_17
Type: TC
Location: 21112 - 22449 (-)
Gene ID: Rep_479_c_342_18
Type: TC
Location: 22598 - 23623 (-)
Gene ID: Rep_479_c_342_19
Type: pfam
Location: 23661 - 24080 (-)
Gene ID: Rep_479_c_342_20
Type: TC
Location: 24753 - 26192 (-)
Gene ID: Rep_479_c_342_21
Type: peptidase
Location: 26399 - 28012 (+)
Gene ID: Rep_479_c_342_22
Type: TC
Location: 28052 - 29899 (+)
Gene ID: Rep_479_c_342_23
Type: TC
Location: 30119 - 31450 (+)
Gene ID: Rep_479_c_342_24
Type: peptidase
Location: 31519 - 33639 (+)
Gene ID: Rep_479_c_342_25
Type: TC
Location: 33725 - 34312 (-)
Gene ID: Rep_479_c_342_26
Type: pfam
Location: 34309 - 35532 (-)
Gene ID: Rep_479_c_342_27
Type: CAZyme
Location: 36081 - 37091 (-)
Gene ID: Rep_479_c_342_28
Type:
Location: 37102 - 38100 (-)
Gene ID: Rep_479_c_342_29
Type: pfam
Location: 38090 - 39232 (-)
Gene ID: Rep_479_c_342_30
Type: CAZyme
Location: 39245 - 40324 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_479_c_342_26 vegan > omnivore 1.85821 0.00455

🧭 Explore Read Mapping of CGC

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