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Cluster: Rep_479_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_479_c_312 Rep_479_c_312_11 7509 8831 + GH43_2
CAZyme Rep_479_c_312 Rep_479_c_312_12 8857 11328 + GH9
CAZyme Rep_479_c_312 Rep_479_c_312_13 11350 12882 + GH51_1
CAZyme Rep_479_c_312 Rep_479_c_312_14 12894 13895 + GH43_29
TC Rep_479_c_312 Rep_479_c_312_15 13951 17085 + 1.B.14.6.1
pfam Rep_479_c_312 Rep_479_c_312_16 17127 18791 + SusD_RagB | SusD-like_3
TC Rep_479_c_312 Rep_479_c_312_17 18964 22143 + 1.B.14.6.1
pfam Rep_479_c_312 Rep_479_c_312_18 22204 23964 + SusD_RagB | SusD-like_3
TF Rep_479_c_312 Rep_479_c_312_19 24302 28132 - HTH_AraC
CAZyme Rep_479_c_312 Rep_479_c_312_20 28194 29360 - CE1
CAZyme Rep_479_c_312 Rep_479_c_312_21 29383 30570 - CE1
Gene ID: Rep_479_c_312_11
Type: CAZyme
Location: 7509 - 8831 (+)
Gene ID: Rep_479_c_312_12
Type: CAZyme
Location: 8857 - 11328 (+)
Gene ID: Rep_479_c_312_13
Type: CAZyme
Location: 11350 - 12882 (+)
Gene ID: Rep_479_c_312_14
Type: CAZyme
Location: 12894 - 13895 (+)
Gene ID: Rep_479_c_312_15
Type: TC
Location: 13951 - 17085 (+)
Gene ID: Rep_479_c_312_16
Type: pfam
Location: 17127 - 18791 (+)
Gene ID: Rep_479_c_312_17
Type: TC
Location: 18964 - 22143 (+)
Gene ID: Rep_479_c_312_18
Type: pfam
Location: 22204 - 23964 (+)
Gene ID: Rep_479_c_312_19
Type: TF
Location: 24302 - 28132 (-)
Gene ID: Rep_479_c_312_20
Type: CAZyme
Location: 28194 - 29360 (-)
Gene ID: Rep_479_c_312_21
Type: CAZyme
Location: 29383 - 30570 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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