Cluster: Rep_479_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: fructan
- Genome ID: Rep_479
- CGC Family ID: CGCFAM_00017
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_479_c_10 | Rep_479_c_10_4 | 4483 | 7554 | + | 1.B.14.6.2 |
| pfam | Rep_479_c_10 | Rep_479_c_10_5 | 7576 | 9360 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_479_c_10 | Rep_479_c_10_6 | 9436 | 11571 | + | GH32 |
| CAZyme | Rep_479_c_10 | Rep_479_c_10_7 | 11584 | 13053 | + | GH32 |
| CAZyme | Rep_479_c_10 | Rep_479_c_10_8 | 13165 | 14979 | + | GH32 |
| TC | Rep_479_c_10 | Rep_479_c_10_9 | 14998 | 16164 | + | 2.A.1.7.17 |
Gene ID: Rep_479_c_10_4
Type: TC
Location: 4483 - 7554 (+)
Type: TC
Location: 4483 - 7554 (+)
Gene ID: Rep_479_c_10_5
Type: pfam
Location: 7576 - 9360 (+)
Type: pfam
Location: 7576 - 9360 (+)
Gene ID: Rep_479_c_10_6
Type: CAZyme
Location: 9436 - 11571 (+)
Type: CAZyme
Location: 9436 - 11571 (+)
Gene ID: Rep_479_c_10_7
Type: CAZyme
Location: 11584 - 13053 (+)
Type: CAZyme
Location: 11584 - 13053 (+)
Gene ID: Rep_479_c_10_8
Type: CAZyme
Location: 13165 - 14979 (+)
Type: CAZyme
Location: 13165 - 14979 (+)
Gene ID: Rep_479_c_10_9
Type: TC
Location: 14998 - 16164 (+)
Type: TC
Location: 14998 - 16164 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_479_c_10_5 | vegan > omnivore | 1.06037 | 0.00455 |
| Rep_479_c_10_6 | vegan > omnivore | 1.07619 | 0.00455 |
| Rep_479_c_10_7 | vegan > omnivore | 1.09890 | 0.00455 |
| Rep_479_c_10_8 | vegetarian > omnivore | 1.07183 | 0.00229 |