Cluster: Rep_479_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_479
- CGC Family ID: CGCFAM_05861
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_479_c_185 | Rep_479_c_185_23 | 19315 | 22926 | - | GH38 |
| CAZyme | Rep_479_c_185 | Rep_479_c_185_24 | 22954 | 24084 | - | GH183 |
| CAZyme | Rep_479_c_185 | Rep_479_c_185_25 | 24096 | 26039 | - | GH172 |
| pfam | Rep_479_c_185 | Rep_479_c_185_26 | 26067 | 27707 | - | Big_2 | DUF4886 |
| pfam | Rep_479_c_185 | Rep_479_c_185_27 | 27751 | 29676 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_479_c_185 | Rep_479_c_185_28 | 29689 | 32790 | - | 1.B.14.6.1 |
| CAZyme | Rep_479_c_185 | Rep_479_c_185_29 | 32991 | 34184 | - | GH172 |
| CAZyme | Rep_479_c_185 | Rep_479_c_185_30 | 34249 | 37308 | - | CBM38 | GH116 |
| pfam | Rep_479_c_185 | Rep_479_c_185_31 | 37330 | 37743 | - | DUF4945 |
| pfam | Rep_479_c_185 | Rep_479_c_185_32 | 37768 | 39603 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_479_c_185 | Rep_479_c_185_33 | 39625 | 42834 | - | 1.B.14.6.1 |
| CAZyme | Rep_479_c_185 | Rep_479_c_185_34 | 42897 | 44078 | - | GH172 |
| TC | Rep_479_c_185 | Rep_479_c_185_35 | 44307 | 45737 | - | 2.A.1.7.1 |
Gene ID: Rep_479_c_185_23
Type: CAZyme
Location: 19315 - 22926 (-)
Type: CAZyme
Location: 19315 - 22926 (-)
Gene ID: Rep_479_c_185_24
Type: CAZyme
Location: 22954 - 24084 (-)
Type: CAZyme
Location: 22954 - 24084 (-)
Gene ID: Rep_479_c_185_25
Type: CAZyme
Location: 24096 - 26039 (-)
Type: CAZyme
Location: 24096 - 26039 (-)
Gene ID: Rep_479_c_185_26
Type: pfam
Location: 26067 - 27707 (-)
Type: pfam
Location: 26067 - 27707 (-)
Gene ID: Rep_479_c_185_27
Type: pfam
Location: 27751 - 29676 (-)
Type: pfam
Location: 27751 - 29676 (-)
Gene ID: Rep_479_c_185_28
Type: TC
Location: 29689 - 32790 (-)
Type: TC
Location: 29689 - 32790 (-)
Gene ID: Rep_479_c_185_29
Type: CAZyme
Location: 32991 - 34184 (-)
Type: CAZyme
Location: 32991 - 34184 (-)
Gene ID: Rep_479_c_185_30
Type: CAZyme
Location: 34249 - 37308 (-)
Type: CAZyme
Location: 34249 - 37308 (-)
Gene ID: Rep_479_c_185_31
Type: pfam
Location: 37330 - 37743 (-)
Type: pfam
Location: 37330 - 37743 (-)
Gene ID: Rep_479_c_185_32
Type: pfam
Location: 37768 - 39603 (-)
Type: pfam
Location: 37768 - 39603 (-)
Gene ID: Rep_479_c_185_33
Type: TC
Location: 39625 - 42834 (-)
Type: TC
Location: 39625 - 42834 (-)
Gene ID: Rep_479_c_185_34
Type: CAZyme
Location: 42897 - 44078 (-)
Type: CAZyme
Location: 42897 - 44078 (-)
Gene ID: Rep_479_c_185_35
Type: TC
Location: 44307 - 45737 (-)
Type: TC
Location: 44307 - 45737 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_479_c_185_30 | vegan > omnivore | 1.13537 | 0.00455 |