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Cluster: Rep_479_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_479_c_158 Rep_479_c_158_9 11657 12994 + 1.B.3.1.7
peptidase Rep_479_c_158 Rep_479_c_158_10 13017 14261 + M75.UPW
pfam Rep_479_c_158 Rep_479_c_158_11 14619 16274 + DHOR | DHOR
TC Rep_479_c_158 Rep_479_c_158_12 16274 18547 + 9.B.14.3.1
CAZyme Rep_479_c_158 Rep_479_c_158_13 18674 23470 + CE8 | PL10_1 | PL1_2
CAZyme Rep_479_c_158 Rep_479_c_158_14 23544 26132 + GH3
CAZyme Rep_479_c_158 Rep_479_c_158_15 26323 27363 + CE8
NULL(UNKNOWN) Rep_479_c_158 Rep_479_c_158_16 27437 28150 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_479_c_158 Rep_479_c_158_17 28185 31517 + 1.B.14.6.1
Gene ID: Rep_479_c_158_9
Type: TC
Location: 11657 - 12994 (+)
Gene ID: Rep_479_c_158_10
Type: peptidase
Location: 13017 - 14261 (+)
Gene ID: Rep_479_c_158_11
Type: pfam
Location: 14619 - 16274 (+)
Gene ID: Rep_479_c_158_12
Type: TC
Location: 16274 - 18547 (+)
Gene ID: Rep_479_c_158_13
Type: CAZyme
Location: 18674 - 23470 (+)
Gene ID: Rep_479_c_158_14
Type: CAZyme
Location: 23544 - 26132 (+)
Gene ID: Rep_479_c_158_15
Type: CAZyme
Location: 26323 - 27363 (+)
Gene ID: Rep_479_c_158_16
Type:
Location: 27437 - 28150 (+)
Gene ID: Rep_479_c_158_17
Type: TC
Location: 28185 - 31517 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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