Cluster: Rep_479_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_479
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_479_c_142 | Rep_479_c_142_3 | 3621 | 5873 | - | GH3 |
| CAZyme | Rep_479_c_142 | Rep_479_c_142_4 | 5876 | 7168 | - | GH158 |
| CAZyme | Rep_479_c_142 | Rep_479_c_142_5 | 7187 | 8542 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_479_c_142 | Rep_479_c_142_6 | 8693 | 10168 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_479_c_142 | Rep_479_c_142_7 | 10200 | 11789 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_479_c_142 | Rep_479_c_142_8 | 11809 | 15144 | - | 1.B.14.6.1 |
Gene ID: Rep_479_c_142_3
Type: CAZyme
Location: 3621 - 5873 (-)
Type: CAZyme
Location: 3621 - 5873 (-)
Gene ID: Rep_479_c_142_4
Type: CAZyme
Location: 5876 - 7168 (-)
Type: CAZyme
Location: 5876 - 7168 (-)
Gene ID: Rep_479_c_142_5
Type: CAZyme
Location: 7187 - 8542 (-)
Type: CAZyme
Location: 7187 - 8542 (-)
Gene ID: Rep_479_c_142_6
Type:
Location: 8693 - 10168 (-)
Type:
Location: 8693 - 10168 (-)
Gene ID: Rep_479_c_142_7
Type: pfam
Location: 10200 - 11789 (-)
Type: pfam
Location: 10200 - 11789 (-)
Gene ID: Rep_479_c_142_8
Type: TC
Location: 11809 - 15144 (-)
Type: TC
Location: 11809 - 15144 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_479_c_142_7 | vegan > omnivore | 1.78279 | 0.00455 |
| Rep_479_c_142_8 | vegan > omnivore | 1.51514 | 0.00455 |
| Rep_479_c_142_8 | vegetarian > omnivore | 2.75717 | 0.00229 |