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Cluster: Rep_479_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_479_c_4 Rep_479_c_4_1 300 3974 + GH2
CAZyme Rep_479_c_4 Rep_479_c_4_2 3982 5604 + CBM6
CAZyme Rep_479_c_4 Rep_479_c_4_3 5612 8209 + GH3
sulfatase Rep_479_c_4 Rep_479_c_4_4 8333 9625 + S1_15
CAZyme Rep_479_c_4 Rep_479_c_4_5 9696 11957 + GH92
CAZyme Rep_479_c_4 Rep_479_c_4_6 11966 14326 + GH3
CAZyme Rep_479_c_4 Rep_479_c_4_7 14451 16877 + GH95
CAZyme Rep_479_c_4 Rep_479_c_4_8 16912 18147 + GH43_2
NULL(UNKNOWN) Rep_479_c_4 Rep_479_c_4_9 18257 20965 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_479_c_4 Rep_479_c_4_10 21060 23924 + GH3
CAZyme Rep_479_c_4 Rep_479_c_4_11 23943 26273 + GH31_4
CAZyme Rep_479_c_4 Rep_479_c_4_12 26699 28963 + GH92
CAZyme Rep_479_c_4 Rep_479_c_4_13 28988 31549 + GH3
CAZyme Rep_479_c_4 Rep_479_c_4_14 31561 32547 + GH43_2
pfam Rep_479_c_4 Rep_479_c_4_15 32636 33379 + NlpE
pfam Rep_479_c_4 Rep_479_c_4_16 33386 34324 - Thioredoxin_8 | DUF5106
TC Rep_479_c_4 Rep_479_c_4_17 34633 36153 + 3.A.2.1.7
pfam Rep_479_c_4 Rep_479_c_4_18 36233 36478 + ATP-synt_DE_N
NULL(UNKNOWN) Rep_479_c_4 Rep_479_c_4_19 36517 36936 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_479_c_4 Rep_479_c_4_20 36920 38059 + 3.A.2.1.1
Gene ID: Rep_479_c_4_1
Type: CAZyme
Location: 300 - 3974 (+)
Gene ID: Rep_479_c_4_2
Type: CAZyme
Location: 3982 - 5604 (+)
Gene ID: Rep_479_c_4_3
Type: CAZyme
Location: 5612 - 8209 (+)
Gene ID: Rep_479_c_4_4
Type: sulfatase
Location: 8333 - 9625 (+)
Gene ID: Rep_479_c_4_5
Type: CAZyme
Location: 9696 - 11957 (+)
Gene ID: Rep_479_c_4_6
Type: CAZyme
Location: 11966 - 14326 (+)
Gene ID: Rep_479_c_4_7
Type: CAZyme
Location: 14451 - 16877 (+)
Gene ID: Rep_479_c_4_8
Type: CAZyme
Location: 16912 - 18147 (+)
Gene ID: Rep_479_c_4_9
Type:
Location: 18257 - 20965 (-)
Gene ID: Rep_479_c_4_10
Type: CAZyme
Location: 21060 - 23924 (+)
Gene ID: Rep_479_c_4_11
Type: CAZyme
Location: 23943 - 26273 (+)
Gene ID: Rep_479_c_4_12
Type: CAZyme
Location: 26699 - 28963 (+)
Gene ID: Rep_479_c_4_13
Type: CAZyme
Location: 28988 - 31549 (+)
Gene ID: Rep_479_c_4_14
Type: CAZyme
Location: 31561 - 32547 (+)
Gene ID: Rep_479_c_4_15
Type: pfam
Location: 32636 - 33379 (+)
Gene ID: Rep_479_c_4_16
Type: pfam
Location: 33386 - 34324 (-)
Gene ID: Rep_479_c_4_17
Type: TC
Location: 34633 - 36153 (+)
Gene ID: Rep_479_c_4_18
Type: pfam
Location: 36233 - 36478 (+)
Gene ID: Rep_479_c_4_19
Type:
Location: 36517 - 36936 (+)
Gene ID: Rep_479_c_4_20
Type: TC
Location: 36920 - 38059 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_479_c_4_8 vegan > omnivore 3.69007 0.00455
Rep_479_c_4_8 vegetarian > omnivore 1.71389 0.02985
Rep_479_c_4_12 vegan > omnivore 2.76035 0.00455
Rep_479_c_4_14 vegan > omnivore 2.73447 0.00455
Rep_479_c_4_17 vegetarian > vegan 1.00409 0.03201

🧭 Explore Read Mapping of CGC

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