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Cluster: Rep_479_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_479_c_114 Rep_479_c_114_13 16953 18185 + 9.B.156.3.1
pfam Rep_479_c_114 Rep_479_c_114_14 18190 18606 + YbeY
CAZyme Rep_479_c_114 Rep_479_c_114_15 18642 20672 - GH182
CAZyme Rep_479_c_114 Rep_479_c_114_16 20696 21700 - GH43_3
CAZyme Rep_479_c_114 Rep_479_c_114_17 21723 22706 - GH43_31
CAZyme Rep_479_c_114 Rep_479_c_114_18 22915 25551 - GH43_31
pfam Rep_479_c_114 Rep_479_c_114_19 25634 27211 - SusD_RagB | SusD-like_3
TC Rep_479_c_114 Rep_479_c_114_20 27233 30268 - 1.B.14.6.1
TF Rep_479_c_114 Rep_479_c_114_21 30573 34586 - HTH_AraC
TC Rep_479_c_114 Rep_479_c_114_22 35186 37060 + 1.C.39.4.5
Gene ID: Rep_479_c_114_13
Type: TC
Location: 16953 - 18185 (+)
Gene ID: Rep_479_c_114_14
Type: pfam
Location: 18190 - 18606 (+)
Gene ID: Rep_479_c_114_15
Type: CAZyme
Location: 18642 - 20672 (-)
Gene ID: Rep_479_c_114_16
Type: CAZyme
Location: 20696 - 21700 (-)
Gene ID: Rep_479_c_114_17
Type: CAZyme
Location: 21723 - 22706 (-)
Gene ID: Rep_479_c_114_18
Type: CAZyme
Location: 22915 - 25551 (-)
Gene ID: Rep_479_c_114_19
Type: pfam
Location: 25634 - 27211 (-)
Gene ID: Rep_479_c_114_20
Type: TC
Location: 27233 - 30268 (-)
Gene ID: Rep_479_c_114_21
Type: TF
Location: 30573 - 34586 (-)
Gene ID: Rep_479_c_114_22
Type: TC
Location: 35186 - 37060 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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