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Cluster: Rep_479_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_479_c_48 Rep_479_c_48_3 3468 5180 - GT83
pfam Rep_479_c_48 Rep_479_c_48_4 5278 5658 + GtrA_DPMS_TM
CAZyme Rep_479_c_48 Rep_479_c_48_5 5760 6710 + GT2
TF Rep_479_c_48 Rep_479_c_48_6 6943 11010 + HTH_AraC | HTH_AraC
STP Rep_479_c_48 Rep_479_c_48_7 11159 11674 + Sigma70_r2 | Sigma70_r4_2
CAZyme Rep_479_c_48 Rep_479_c_48_8 11735 12961 + CBM32
TC Rep_479_c_48 Rep_479_c_48_9 13005 16298 + 1.B.14.6.1
pfam Rep_479_c_48 Rep_479_c_48_10 16323 18341 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_479_c_48 Rep_479_c_48_11 18654 18782 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_479_c_48 Rep_479_c_48_12 18817 20250 - GH28
CAZyme Rep_479_c_48 Rep_479_c_48_13 20388 22739 - GH31_4
Gene ID: Rep_479_c_48_3
Type: CAZyme
Location: 3468 - 5180 (-)
Gene ID: Rep_479_c_48_4
Type: pfam
Location: 5278 - 5658 (+)
Gene ID: Rep_479_c_48_5
Type: CAZyme
Location: 5760 - 6710 (+)
Gene ID: Rep_479_c_48_6
Type: TF
Location: 6943 - 11010 (+)
Gene ID: Rep_479_c_48_7
Type: STP
Location: 11159 - 11674 (+)
Gene ID: Rep_479_c_48_8
Type: CAZyme
Location: 11735 - 12961 (+)
Gene ID: Rep_479_c_48_9
Type: TC
Location: 13005 - 16298 (+)
Gene ID: Rep_479_c_48_10
Type: pfam
Location: 16323 - 18341 (+)
Gene ID: Rep_479_c_48_11
Type:
Location: 18654 - 18782 (+)
Gene ID: Rep_479_c_48_12
Type: CAZyme
Location: 18817 - 20250 (-)
Gene ID: Rep_479_c_48_13
Type: CAZyme
Location: 20388 - 22739 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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