Cluster: Rep_479_CGC11
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 11
- Substrate: xylan
- Genome ID: Rep_479
- CGC Family ID: CGCFAM_00273
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_479_c_42 | Rep_479_c_42_1 | 133 | 2622 | + | CBM6 | CE1 | GH43_29 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_2 | 2633 | 4579 | + | GH97 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_3 | 4586 | 5914 | + | CBM6 | GH43_29 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_4 | 5930 | 8299 | + | CBM91 | CE6 | GH43_10 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_5 | 8312 | 10897 | + | GH115 |
| TF | Rep_479_c_42 | Rep_479_c_42_6 | 11056 | 15135 | - | HTH_AraC |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_7 | 15255 | 17276 | - | GH67 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_8 | 17301 | 18266 | - | GH43_1 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_9 | 18454 | 19545 | - | GH10 |
| TC | Rep_479_c_42 | Rep_479_c_42_10 | 19615 | 21021 | - | 2.A.2.3.2 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_11 | 21031 | 22773 | - | CE20 | CE20 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_12 | 23014 | 24735 | - | GH35 |
| CAZyme | Rep_479_c_42 | Rep_479_c_42_13 | 24975 | 27263 | - | GH10 |
| pfam | Rep_479_c_42 | Rep_479_c_42_14 | 27323 | 28735 | - | SGBP_B_XBD |
| pfam | Rep_479_c_42 | Rep_479_c_42_15 | 28756 | 30441 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_479_c_42 | Rep_479_c_42_16 | 30462 | 33617 | - | 1.B.14.6.1 |
Gene ID: Rep_479_c_42_1
Type: CAZyme
Location: 133 - 2622 (+)
Type: CAZyme
Location: 133 - 2622 (+)
Gene ID: Rep_479_c_42_2
Type: CAZyme
Location: 2633 - 4579 (+)
Type: CAZyme
Location: 2633 - 4579 (+)
Gene ID: Rep_479_c_42_3
Type: CAZyme
Location: 4586 - 5914 (+)
Type: CAZyme
Location: 4586 - 5914 (+)
Gene ID: Rep_479_c_42_4
Type: CAZyme
Location: 5930 - 8299 (+)
Type: CAZyme
Location: 5930 - 8299 (+)
Gene ID: Rep_479_c_42_5
Type: CAZyme
Location: 8312 - 10897 (+)
Type: CAZyme
Location: 8312 - 10897 (+)
Gene ID: Rep_479_c_42_6
Type: TF
Location: 11056 - 15135 (-)
Type: TF
Location: 11056 - 15135 (-)
Gene ID: Rep_479_c_42_7
Type: CAZyme
Location: 15255 - 17276 (-)
Type: CAZyme
Location: 15255 - 17276 (-)
Gene ID: Rep_479_c_42_8
Type: CAZyme
Location: 17301 - 18266 (-)
Type: CAZyme
Location: 17301 - 18266 (-)
Gene ID: Rep_479_c_42_9
Type: CAZyme
Location: 18454 - 19545 (-)
Type: CAZyme
Location: 18454 - 19545 (-)
Gene ID: Rep_479_c_42_10
Type: TC
Location: 19615 - 21021 (-)
Type: TC
Location: 19615 - 21021 (-)
Gene ID: Rep_479_c_42_11
Type: CAZyme
Location: 21031 - 22773 (-)
Type: CAZyme
Location: 21031 - 22773 (-)
Gene ID: Rep_479_c_42_12
Type: CAZyme
Location: 23014 - 24735 (-)
Type: CAZyme
Location: 23014 - 24735 (-)
Gene ID: Rep_479_c_42_13
Type: CAZyme
Location: 24975 - 27263 (-)
Type: CAZyme
Location: 24975 - 27263 (-)
Gene ID: Rep_479_c_42_14
Type: pfam
Location: 27323 - 28735 (-)
Type: pfam
Location: 27323 - 28735 (-)
Gene ID: Rep_479_c_42_15
Type: pfam
Location: 28756 - 30441 (-)
Type: pfam
Location: 28756 - 30441 (-)
Gene ID: Rep_479_c_42_16
Type: TC
Location: 30462 - 33617 (-)
Type: TC
Location: 30462 - 33617 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.