Cluster: Rep_476_CGC62
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_11294
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_476_c_207 | Rep_476_c_207_5 | 4933 | 5958 | - | 8.A.59.2.1 |
| pfam | Rep_476_c_207 | Rep_476_c_207_6 | 5988 | 7280 | - | OEP | OEP |
| TC | Rep_476_c_207 | Rep_476_c_207_7 | 7283 | 10315 | - | 2.A.6.2.37 |
| pfam | Rep_476_c_207 | Rep_476_c_207_8 | 10321 | 11343 | - | HlyD_3 | HlyD_D23 |
| STP | Rep_476_c_207 | Rep_476_c_207_9 | 11669 | 12274 | + | TetR_N |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_10 | 12874 | 15363 | - | GH3 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_11 | 15500 | 17827 | - | GH3 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_12 | 17832 | 19028 | - | CE1 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_13 | 19118 | 20320 | - | CE1 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_14 | 20328 | 21227 | - | CE1 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_15 | 21316 | 23682 | - | GH3 |
| CAZyme | Rep_476_c_207 | Rep_476_c_207_16 | 23695 | 25371 | - | CE1 |
| TC | Rep_476_c_207 | Rep_476_c_207_17 | 25408 | 26967 | - | 8.A.46.1.6 |
| TC | Rep_476_c_207 | Rep_476_c_207_18 | 26991 | 30089 | - | 1.B.14.6.1 |
Gene ID: Rep_476_c_207_5
Type: TC
Location: 4933 - 5958 (-)
Type: TC
Location: 4933 - 5958 (-)
Gene ID: Rep_476_c_207_6
Type: pfam
Location: 5988 - 7280 (-)
Type: pfam
Location: 5988 - 7280 (-)
Gene ID: Rep_476_c_207_7
Type: TC
Location: 7283 - 10315 (-)
Type: TC
Location: 7283 - 10315 (-)
Gene ID: Rep_476_c_207_8
Type: pfam
Location: 10321 - 11343 (-)
Type: pfam
Location: 10321 - 11343 (-)
Gene ID: Rep_476_c_207_9
Type: STP
Location: 11669 - 12274 (+)
Type: STP
Location: 11669 - 12274 (+)
Gene ID: Rep_476_c_207_10
Type: CAZyme
Location: 12874 - 15363 (-)
Type: CAZyme
Location: 12874 - 15363 (-)
Gene ID: Rep_476_c_207_11
Type: CAZyme
Location: 15500 - 17827 (-)
Type: CAZyme
Location: 15500 - 17827 (-)
Gene ID: Rep_476_c_207_12
Type: CAZyme
Location: 17832 - 19028 (-)
Type: CAZyme
Location: 17832 - 19028 (-)
Gene ID: Rep_476_c_207_13
Type: CAZyme
Location: 19118 - 20320 (-)
Type: CAZyme
Location: 19118 - 20320 (-)
Gene ID: Rep_476_c_207_14
Type: CAZyme
Location: 20328 - 21227 (-)
Type: CAZyme
Location: 20328 - 21227 (-)
Gene ID: Rep_476_c_207_15
Type: CAZyme
Location: 21316 - 23682 (-)
Type: CAZyme
Location: 21316 - 23682 (-)
Gene ID: Rep_476_c_207_16
Type: CAZyme
Location: 23695 - 25371 (-)
Type: CAZyme
Location: 23695 - 25371 (-)
Gene ID: Rep_476_c_207_17
Type: TC
Location: 25408 - 26967 (-)
Type: TC
Location: 25408 - 26967 (-)
Gene ID: Rep_476_c_207_18
Type: TC
Location: 26991 - 30089 (-)
Type: TC
Location: 26991 - 30089 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.