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Cluster: Rep_476_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_476_c_200 Rep_476_c_200_26 34482 35636 + CE19
CAZyme Rep_476_c_200 Rep_476_c_200_27 35848 37617 - CE12 | CE8
CAZyme Rep_476_c_200 Rep_476_c_200_28 37639 38604 - CE8
CAZyme Rep_476_c_200 Rep_476_c_200_29 38601 39824 - GH105
TC Rep_476_c_200 Rep_476_c_200_30 40117 41508 + 4.A.5.1.2
pfam Rep_476_c_200 Rep_476_c_200_31 41536 42492 + KduI
TC Rep_476_c_200 Rep_476_c_200_32 42535 44124 + 2.A.1.14.25
Gene ID: Rep_476_c_200_26
Type: CAZyme
Location: 34482 - 35636 (+)
Gene ID: Rep_476_c_200_27
Type: CAZyme
Location: 35848 - 37617 (-)
Gene ID: Rep_476_c_200_28
Type: CAZyme
Location: 37639 - 38604 (-)
Gene ID: Rep_476_c_200_29
Type: CAZyme
Location: 38601 - 39824 (-)
Gene ID: Rep_476_c_200_30
Type: TC
Location: 40117 - 41508 (+)
Gene ID: Rep_476_c_200_31
Type: pfam
Location: 41536 - 42492 (+)
Gene ID: Rep_476_c_200_32
Type: TC
Location: 42535 - 44124 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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