Cluster: Rep_476_CGC56
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_476
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_476_c_188 | Rep_476_c_188_9 | 10311 | 11591 | + | GH171 |
| TC | Rep_476_c_188 | Rep_476_c_188_10 | 11736 | 13196 | + | 2.A.21.3.7 |
| NULL(UNKNOWN) | Rep_476_c_188 | Rep_476_c_188_11 | 13207 | 16311 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_476_c_188 | Rep_476_c_188_12 | 16362 | 18191 | + | Metallophos | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 |
| CAZyme | Rep_476_c_188 | Rep_476_c_188_13 | 18216 | 19676 | + | GT2 |
Gene ID: Rep_476_c_188_9
Type: CAZyme
Location: 10311 - 11591 (+)
Type: CAZyme
Location: 10311 - 11591 (+)
Gene ID: Rep_476_c_188_10
Type: TC
Location: 11736 - 13196 (+)
Type: TC
Location: 11736 - 13196 (+)
Gene ID: Rep_476_c_188_11
Type:
Location: 13207 - 16311 (+)
Type:
Location: 13207 - 16311 (+)
Gene ID: Rep_476_c_188_12
Type: pfam
Location: 16362 - 18191 (+)
Type: pfam
Location: 16362 - 18191 (+)
Gene ID: Rep_476_c_188_13
Type: CAZyme
Location: 18216 - 19676 (+)
Type: CAZyme
Location: 18216 - 19676 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.