Cluster: Rep_476_CGC19
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_06551
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_476_c_61 | Rep_476_c_61_2 | 1201 | 2940 | + | 9.B.174.1.2 |
| STP | Rep_476_c_61 | Rep_476_c_61_3 | 3089 | 5893 | + | Y_Y_Y |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_4 | 6061 | 8352 | + | GH3 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_5 | 8505 | 11156 | + | CBM57 | GH2 |
| sulfatase | Rep_476_c_61 | Rep_476_c_61_6 | 11204 | 12769 | + | S1_15 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_7 | 12817 | 14001 | + | GH172 |
| sulfatase | Rep_476_c_61 | Rep_476_c_61_8 | 14071 | 15366 | + | S1_14 |
| sulfatase | Rep_476_c_61 | Rep_476_c_61_9 | 15380 | 16957 | + | S1_19 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_10 | 16983 | 18134 | + | GH172 |
| TC | Rep_476_c_61 | Rep_476_c_61_11 | 18340 | 21315 | + | 1.B.14.6.1 |
| TC | Rep_476_c_61 | Rep_476_c_61_12 | 21341 | 22849 | + | 8.A.46.1.3 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_13 | 22917 | 24248 | + | GH144 |
| pfam | Rep_476_c_61 | Rep_476_c_61_14 | 24311 | 25162 | + | Exo_endo_phos |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_15 | 25174 | 27444 | + | GH3 |
| sulfatase | Rep_476_c_61 | Rep_476_c_61_16 | 27475 | 29043 | + | S1_11 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_17 | 29100 | 30833 | + | CBM32 | GH43_28 |
| CAZyme | Rep_476_c_61 | Rep_476_c_61_18 | 30928 | 32664 | + | CBM32 | GH43_28 |
Gene ID: Rep_476_c_61_2
Type: TC
Location: 1201 - 2940 (+)
Type: TC
Location: 1201 - 2940 (+)
Gene ID: Rep_476_c_61_3
Type: STP
Location: 3089 - 5893 (+)
Type: STP
Location: 3089 - 5893 (+)
Gene ID: Rep_476_c_61_4
Type: CAZyme
Location: 6061 - 8352 (+)
Type: CAZyme
Location: 6061 - 8352 (+)
Gene ID: Rep_476_c_61_5
Type: CAZyme
Location: 8505 - 11156 (+)
Type: CAZyme
Location: 8505 - 11156 (+)
Gene ID: Rep_476_c_61_6
Type: sulfatase
Location: 11204 - 12769 (+)
Type: sulfatase
Location: 11204 - 12769 (+)
Gene ID: Rep_476_c_61_7
Type: CAZyme
Location: 12817 - 14001 (+)
Type: CAZyme
Location: 12817 - 14001 (+)
Gene ID: Rep_476_c_61_8
Type: sulfatase
Location: 14071 - 15366 (+)
Type: sulfatase
Location: 14071 - 15366 (+)
Gene ID: Rep_476_c_61_9
Type: sulfatase
Location: 15380 - 16957 (+)
Type: sulfatase
Location: 15380 - 16957 (+)
Gene ID: Rep_476_c_61_10
Type: CAZyme
Location: 16983 - 18134 (+)
Type: CAZyme
Location: 16983 - 18134 (+)
Gene ID: Rep_476_c_61_11
Type: TC
Location: 18340 - 21315 (+)
Type: TC
Location: 18340 - 21315 (+)
Gene ID: Rep_476_c_61_12
Type: TC
Location: 21341 - 22849 (+)
Type: TC
Location: 21341 - 22849 (+)
Gene ID: Rep_476_c_61_13
Type: CAZyme
Location: 22917 - 24248 (+)
Type: CAZyme
Location: 22917 - 24248 (+)
Gene ID: Rep_476_c_61_14
Type: pfam
Location: 24311 - 25162 (+)
Type: pfam
Location: 24311 - 25162 (+)
Gene ID: Rep_476_c_61_15
Type: CAZyme
Location: 25174 - 27444 (+)
Type: CAZyme
Location: 25174 - 27444 (+)
Gene ID: Rep_476_c_61_16
Type: sulfatase
Location: 27475 - 29043 (+)
Type: sulfatase
Location: 27475 - 29043 (+)
Gene ID: Rep_476_c_61_17
Type: CAZyme
Location: 29100 - 30833 (+)
Type: CAZyme
Location: 29100 - 30833 (+)
Gene ID: Rep_476_c_61_18
Type: CAZyme
Location: 30928 - 32664 (+)
Type: CAZyme
Location: 30928 - 32664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.