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Cluster: Rep_472_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_472_c_28 Rep_472_c_28_13 16779 17765 + GH43_29
CAZyme Rep_472_c_28 Rep_472_c_28_14 17792 18997 + CE1
CAZyme Rep_472_c_28 Rep_472_c_28_15 18994 20568 + CBM91 | GH43_10
TC Rep_472_c_28 Rep_472_c_28_16 20731 23739 - 2.A.6.4.3
peptidase Rep_472_c_28 Rep_472_c_28_17 23823 25910 - M03.UPA
pfam Rep_472_c_28 Rep_472_c_28_18 25941 27041 - Exo_endo_phos
TC Rep_472_c_28 Rep_472_c_28_19 27082 27972 - 9.B.104.1.2
TC Rep_472_c_28 Rep_472_c_28_20 27953 28636 - 9.B.104.1.5
Gene ID: Rep_472_c_28_13
Type: CAZyme
Location: 16779 - 17765 (+)
Gene ID: Rep_472_c_28_14
Type: CAZyme
Location: 17792 - 18997 (+)
Gene ID: Rep_472_c_28_15
Type: CAZyme
Location: 18994 - 20568 (+)
Gene ID: Rep_472_c_28_16
Type: TC
Location: 20731 - 23739 (-)
Gene ID: Rep_472_c_28_17
Type: peptidase
Location: 23823 - 25910 (-)
Gene ID: Rep_472_c_28_18
Type: pfam
Location: 25941 - 27041 (-)
Gene ID: Rep_472_c_28_19
Type: TC
Location: 27082 - 27972 (-)
Gene ID: Rep_472_c_28_20
Type: TC
Location: 27953 - 28636 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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