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Cluster: Rep_472_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_472_c_22 Rep_472_c_22_12 9812 10636 - 3.A.1.15.13
NULL(UNKNOWN) Rep_472_c_22 Rep_472_c_22_13 10681 11109 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_472_c_22 Rep_472_c_22_14 11252 11464 + TatA_B_E
TC Rep_472_c_22 Rep_472_c_22_15 11472 12305 + 2.A.64.2.1
pfam Rep_472_c_22 Rep_472_c_22_16 12302 15727 + AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30
TF Rep_472_c_22 Rep_472_c_22_17 16276 20379 - HTH_AraC
TC Rep_472_c_22 Rep_472_c_22_18 20822 24049 + 1.B.14.6.1
pfam Rep_472_c_22 Rep_472_c_22_19 24071 25825 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_472_c_22 Rep_472_c_22_20 25845 26558 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_472_c_22 Rep_472_c_22_21 26854 29343 + GH115
CAZyme Rep_472_c_22 Rep_472_c_22_22 29363 31078 + GH35
CAZyme Rep_472_c_22 Rep_472_c_22_23 31124 32764 + CE20 | CE20
TC Rep_472_c_22 Rep_472_c_22_24 32787 34283 + 2.A.2.3.4
CAZyme Rep_472_c_22 Rep_472_c_22_25 34312 37038 + CBM91 | GH10 | GH43_12
Gene ID: Rep_472_c_22_12
Type: TC
Location: 9812 - 10636 (-)
Gene ID: Rep_472_c_22_13
Type:
Location: 10681 - 11109 (-)
Gene ID: Rep_472_c_22_14
Type: pfam
Location: 11252 - 11464 (+)
Gene ID: Rep_472_c_22_15
Type: TC
Location: 11472 - 12305 (+)
Gene ID: Rep_472_c_22_16
Type: pfam
Location: 12302 - 15727 (+)
Gene ID: Rep_472_c_22_17
Type: TF
Location: 16276 - 20379 (-)
Gene ID: Rep_472_c_22_18
Type: TC
Location: 20822 - 24049 (+)
Gene ID: Rep_472_c_22_19
Type: pfam
Location: 24071 - 25825 (+)
Gene ID: Rep_472_c_22_20
Type:
Location: 25845 - 26558 (+)
Gene ID: Rep_472_c_22_21
Type: CAZyme
Location: 26854 - 29343 (+)
Gene ID: Rep_472_c_22_22
Type: CAZyme
Location: 29363 - 31078 (+)
Gene ID: Rep_472_c_22_23
Type: CAZyme
Location: 31124 - 32764 (+)
Gene ID: Rep_472_c_22_24
Type: TC
Location: 32787 - 34283 (+)
Gene ID: Rep_472_c_22_25
Type: CAZyme
Location: 34312 - 37038 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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