Cluster: Rep_472_CGC50
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_472
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_472_c_199 | Rep_472_c_199_12 | 10126 | 12273 | + | GH31_1 |
| TF | Rep_472_c_199 | Rep_472_c_199_13 | 12383 | 12976 | + | GerE |
| STP | Rep_472_c_199 | Rep_472_c_199_14 | 13047 | 14057 | + | FecR |
| TC | Rep_472_c_199 | Rep_472_c_199_15 | 14301 | 17612 | + | 1.B.14.6.1 |
| TC | Rep_472_c_199 | Rep_472_c_199_16 | 17632 | 19407 | + | 8.A.46.1.6 |
| CAZyme | Rep_472_c_199 | Rep_472_c_199_17 | 19527 | 22166 | + | CBM67 | GH78 |
| pfam | Rep_472_c_199 | Rep_472_c_199_18 | 22365 | 23741 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_472_c_199 | Rep_472_c_199_19 | 23755 | 26070 | + | GH92 |
| pfam | Rep_472_c_199 | Rep_472_c_199_20 | 26076 | 27551 | + | FGGY_N | FGGY_C |
| pfam | Rep_472_c_199 | Rep_472_c_199_21 | 27573 | 28826 | + | RhaA |
| TC | Rep_472_c_199 | Rep_472_c_199_22 | 28840 | 29880 | + | 2.A.7.6.1 |
| pfam | Rep_472_c_199 | Rep_472_c_199_23 | 29893 | 30702 | + | Aldolase_II |
| NULL(UNKNOWN) | Rep_472_c_199 | Rep_472_c_199_24 | 30813 | 31580 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_472_c_199 | Rep_472_c_199_25 | 31721 | 33052 | - | 1.A.11.1.5 |
| CAZyme | Rep_472_c_199 | Rep_472_c_199_26 | 33459 | 34436 | - | GH5_2 |
Gene ID: Rep_472_c_199_12
Type: CAZyme
Location: 10126 - 12273 (+)
Type: CAZyme
Location: 10126 - 12273 (+)
Gene ID: Rep_472_c_199_13
Type: TF
Location: 12383 - 12976 (+)
Type: TF
Location: 12383 - 12976 (+)
Gene ID: Rep_472_c_199_14
Type: STP
Location: 13047 - 14057 (+)
Type: STP
Location: 13047 - 14057 (+)
Gene ID: Rep_472_c_199_15
Type: TC
Location: 14301 - 17612 (+)
Type: TC
Location: 14301 - 17612 (+)
Gene ID: Rep_472_c_199_16
Type: TC
Location: 17632 - 19407 (+)
Type: TC
Location: 17632 - 19407 (+)
Gene ID: Rep_472_c_199_17
Type: CAZyme
Location: 19527 - 22166 (+)
Type: CAZyme
Location: 19527 - 22166 (+)
Gene ID: Rep_472_c_199_18
Type: pfam
Location: 22365 - 23741 (+)
Type: pfam
Location: 22365 - 23741 (+)
Gene ID: Rep_472_c_199_19
Type: CAZyme
Location: 23755 - 26070 (+)
Type: CAZyme
Location: 23755 - 26070 (+)
Gene ID: Rep_472_c_199_20
Type: pfam
Location: 26076 - 27551 (+)
Type: pfam
Location: 26076 - 27551 (+)
Gene ID: Rep_472_c_199_21
Type: pfam
Location: 27573 - 28826 (+)
Type: pfam
Location: 27573 - 28826 (+)
Gene ID: Rep_472_c_199_22
Type: TC
Location: 28840 - 29880 (+)
Type: TC
Location: 28840 - 29880 (+)
Gene ID: Rep_472_c_199_23
Type: pfam
Location: 29893 - 30702 (+)
Type: pfam
Location: 29893 - 30702 (+)
Gene ID: Rep_472_c_199_24
Type:
Location: 30813 - 31580 (-)
Type:
Location: 30813 - 31580 (-)
Gene ID: Rep_472_c_199_25
Type: TC
Location: 31721 - 33052 (-)
Type: TC
Location: 31721 - 33052 (-)
Gene ID: Rep_472_c_199_26
Type: CAZyme
Location: 33459 - 34436 (-)
Type: CAZyme
Location: 33459 - 34436 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905203765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.