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Cluster: Rep_472_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_472_c_195 Rep_472_c_195_3 2168 3007 + GH16_3
CAZyme Rep_472_c_195 Rep_472_c_195_4 3129 6026 + GH43_19 | GH97
CAZyme Rep_472_c_195 Rep_472_c_195_5 6183 9278 + GH2
NULL(UNKNOWN) Rep_472_c_195 Rep_472_c_195_6 9349 9777 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_472_c_195 Rep_472_c_195_7 9781 10362 - Adenine_glyco
CAZyme Rep_472_c_195 Rep_472_c_195_8 10555 11598 + GH43_17
NULL(UNKNOWN) Rep_472_c_195 Rep_472_c_195_9 11563 12348 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_472_c_195 Rep_472_c_195_10 12522 16658 + HTH_AraC
TC Rep_472_c_195 Rep_472_c_195_11 16875 20153 + 1.B.14.6.1
pfam Rep_472_c_195 Rep_472_c_195_12 20173 22230 + SusD_RagB | SusD-like_3
CAZyme Rep_472_c_195 Rep_472_c_195_13 22342 23493 + GH43_24
CAZyme Rep_472_c_195 Rep_472_c_195_14 23569 25995 - GH35
Gene ID: Rep_472_c_195_3
Type: CAZyme
Location: 2168 - 3007 (+)
Gene ID: Rep_472_c_195_4
Type: CAZyme
Location: 3129 - 6026 (+)
Gene ID: Rep_472_c_195_5
Type: CAZyme
Location: 6183 - 9278 (+)
Gene ID: Rep_472_c_195_6
Type:
Location: 9349 - 9777 (-)
Gene ID: Rep_472_c_195_7
Type: pfam
Location: 9781 - 10362 (-)
Gene ID: Rep_472_c_195_8
Type: CAZyme
Location: 10555 - 11598 (+)
Gene ID: Rep_472_c_195_9
Type:
Location: 11563 - 12348 (-)
Gene ID: Rep_472_c_195_10
Type: TF
Location: 12522 - 16658 (+)
Gene ID: Rep_472_c_195_11
Type: TC
Location: 16875 - 20153 (+)
Gene ID: Rep_472_c_195_12
Type: pfam
Location: 20173 - 22230 (+)
Gene ID: Rep_472_c_195_13
Type: CAZyme
Location: 22342 - 23493 (+)
Gene ID: Rep_472_c_195_14
Type: CAZyme
Location: 23569 - 25995 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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