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Cluster: Rep_472_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_472_c_160 Rep_472_c_160_1 32 1252 - 3.A.1.122.1
TC Rep_472_c_160 Rep_472_c_160_2 1283 2029 - 3.A.1.122.2
TC Rep_472_c_160 Rep_472_c_160_3 2040 3263 - 8.A.1.2.2
pfam Rep_472_c_160 Rep_472_c_160_4 3564 4874 - OEP | OEP
pfam Rep_472_c_160 Rep_472_c_160_5 5147 5371 + DUF4492
TC Rep_472_c_160 Rep_472_c_160_6 5391 6938 + 3.D.4.3.2
pfam Rep_472_c_160 Rep_472_c_160_7 7055 8203 + Cyt_bd_oxida_II
CAZyme Rep_472_c_160 Rep_472_c_160_8 8366 9112 - GT51
TC Rep_472_c_160 Rep_472_c_160_9 9211 9885 - 9.B.186.1.3
TC Rep_472_c_160 Rep_472_c_160_10 9976 11304 - 2.A.66.1.13
TC Rep_472_c_160 Rep_472_c_160_11 11353 12687 - 3.A.1.11.7
TC Rep_472_c_160 Rep_472_c_160_12 12896 13690 - 3.A.1.11.8
TC Rep_472_c_160 Rep_472_c_160_13 13687 14487 - 3.A.1.11.8
TC Rep_472_c_160 Rep_472_c_160_14 14477 15895 - 3.A.1.11.8
Gene ID: Rep_472_c_160_1
Type: TC
Location: 32 - 1252 (-)
Gene ID: Rep_472_c_160_2
Type: TC
Location: 1283 - 2029 (-)
Gene ID: Rep_472_c_160_3
Type: TC
Location: 2040 - 3263 (-)
Gene ID: Rep_472_c_160_4
Type: pfam
Location: 3564 - 4874 (-)
Gene ID: Rep_472_c_160_5
Type: pfam
Location: 5147 - 5371 (+)
Gene ID: Rep_472_c_160_6
Type: TC
Location: 5391 - 6938 (+)
Gene ID: Rep_472_c_160_7
Type: pfam
Location: 7055 - 8203 (+)
Gene ID: Rep_472_c_160_8
Type: CAZyme
Location: 8366 - 9112 (-)
Gene ID: Rep_472_c_160_9
Type: TC
Location: 9211 - 9885 (-)
Gene ID: Rep_472_c_160_10
Type: TC
Location: 9976 - 11304 (-)
Gene ID: Rep_472_c_160_11
Type: TC
Location: 11353 - 12687 (-)
Gene ID: Rep_472_c_160_12
Type: TC
Location: 12896 - 13690 (-)
Gene ID: Rep_472_c_160_13
Type: TC
Location: 13687 - 14487 (-)
Gene ID: Rep_472_c_160_14
Type: TC
Location: 14477 - 15895 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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