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Cluster: Rep_472_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_472_c_140 Rep_472_c_140_20 19992 22445 - GH95
CAZyme Rep_472_c_140 Rep_472_c_140_21 22679 25195 - GH2
CAZyme Rep_472_c_140 Rep_472_c_140_22 25293 28166 - GH31_4
TF Rep_472_c_140 Rep_472_c_140_23 28303 32349 - HTH_AraC
CAZyme Rep_472_c_140 Rep_472_c_140_24 32549 34093 - GH5_4
CAZyme Rep_472_c_140 Rep_472_c_140_25 34336 35901 + CBM91 | GH43_12
NULL(UNKNOWN) Rep_472_c_140 Rep_472_c_140_26 36452 38296 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_472_c_140 Rep_472_c_140_27 38332 40008 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_472_c_140 Rep_472_c_140_28 40029 43223 - 1.B.14.6.1
Gene ID: Rep_472_c_140_20
Type: CAZyme
Location: 19992 - 22445 (-)
Gene ID: Rep_472_c_140_21
Type: CAZyme
Location: 22679 - 25195 (-)
Gene ID: Rep_472_c_140_22
Type: CAZyme
Location: 25293 - 28166 (-)
Gene ID: Rep_472_c_140_23
Type: TF
Location: 28303 - 32349 (-)
Gene ID: Rep_472_c_140_24
Type: CAZyme
Location: 32549 - 34093 (-)
Gene ID: Rep_472_c_140_25
Type: CAZyme
Location: 34336 - 35901 (+)
Gene ID: Rep_472_c_140_26
Type:
Location: 36452 - 38296 (-)
Gene ID: Rep_472_c_140_27
Type: pfam
Location: 38332 - 40008 (-)
Gene ID: Rep_472_c_140_28
Type: TC
Location: 40029 - 43223 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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