Cluster: Rep_472_CGC29
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_472
- CGC Family ID: CGCFAM_00337
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_472_c_114 | Rep_472_c_114_1 | 73 | 1416 | - | GH13 |
| pfam | Rep_472_c_114 | Rep_472_c_114_2 | 1486 | 3096 | - | SusE |
| TC | Rep_472_c_114 | Rep_472_c_114_3 | 3121 | 4740 | - | 8.A.46.1.1 |
| TC | Rep_472_c_114 | Rep_472_c_114_4 | 4752 | 7754 | - | 1.B.14.6.1 |
| CAZyme | Rep_472_c_114 | Rep_472_c_114_5 | 8960 | 11440 | - | GH2 |
| CAZyme | Rep_472_c_114 | Rep_472_c_114_6 | 11471 | 12571 | - | GH53 |
| TF | Rep_472_c_114 | Rep_472_c_114_7 | 12807 | 13811 | + | LacI |
| TC | Rep_472_c_114 | Rep_472_c_114_8 | 13830 | 15206 | + | 2.A.2.6.2 |
| NULL(UNKNOWN) | Rep_472_c_114 | Rep_472_c_114_9 | 15245 | 15373 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_472_c_114 | Rep_472_c_114_10 | 15432 | 17747 | + | GH65 |
| TC | Rep_472_c_114 | Rep_472_c_114_11 | 17921 | 18964 | + | 2.A.6.2.47 |
| TC | Rep_472_c_114 | Rep_472_c_114_12 | 18961 | 21993 | + | 2.A.6.2.37 |
| pfam | Rep_472_c_114 | Rep_472_c_114_13 | 22006 | 23274 | + | OEP | OEP |
| TC | Rep_472_c_114 | Rep_472_c_114_14 | 23381 | 24616 | - | 3.B.1.1.2 |
Gene ID: Rep_472_c_114_1
Type: CAZyme
Location: 73 - 1416 (-)
Type: CAZyme
Location: 73 - 1416 (-)
Gene ID: Rep_472_c_114_2
Type: pfam
Location: 1486 - 3096 (-)
Type: pfam
Location: 1486 - 3096 (-)
Gene ID: Rep_472_c_114_3
Type: TC
Location: 3121 - 4740 (-)
Type: TC
Location: 3121 - 4740 (-)
Gene ID: Rep_472_c_114_4
Type: TC
Location: 4752 - 7754 (-)
Type: TC
Location: 4752 - 7754 (-)
Gene ID: Rep_472_c_114_5
Type: CAZyme
Location: 8960 - 11440 (-)
Type: CAZyme
Location: 8960 - 11440 (-)
Gene ID: Rep_472_c_114_6
Type: CAZyme
Location: 11471 - 12571 (-)
Type: CAZyme
Location: 11471 - 12571 (-)
Gene ID: Rep_472_c_114_7
Type: TF
Location: 12807 - 13811 (+)
Type: TF
Location: 12807 - 13811 (+)
Gene ID: Rep_472_c_114_8
Type: TC
Location: 13830 - 15206 (+)
Type: TC
Location: 13830 - 15206 (+)
Gene ID: Rep_472_c_114_9
Type:
Location: 15245 - 15373 (-)
Type:
Location: 15245 - 15373 (-)
Gene ID: Rep_472_c_114_10
Type: CAZyme
Location: 15432 - 17747 (+)
Type: CAZyme
Location: 15432 - 17747 (+)
Gene ID: Rep_472_c_114_11
Type: TC
Location: 17921 - 18964 (+)
Type: TC
Location: 17921 - 18964 (+)
Gene ID: Rep_472_c_114_12
Type: TC
Location: 18961 - 21993 (+)
Type: TC
Location: 18961 - 21993 (+)
Gene ID: Rep_472_c_114_13
Type: pfam
Location: 22006 - 23274 (+)
Type: pfam
Location: 22006 - 23274 (+)
Gene ID: Rep_472_c_114_14
Type: TC
Location: 23381 - 24616 (-)
Type: TC
Location: 23381 - 24616 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905203765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.