Cluster: Rep_472_CGC2
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: host glycan
- Genome ID: Rep_472
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_472_c_9 | Rep_472_c_9_8 | 9659 | 10762 | + | 2.A.6.1.4 |
| TC | Rep_472_c_9 | Rep_472_c_9_9 | 10769 | 15142 | + | 2.A.6.1.6 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_10 | 15170 | 17497 | - | GH92 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_11 | 17811 | 18779 | - | GH130_2 |
| pfam | Rep_472_c_9 | Rep_472_c_9_12 | 18807 | 20114 | - | MFS_1 | MFS_1 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_13 | 20139 | 22412 | - | GH92 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_14 | 22444 | 24456 | - | GH97 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_15 | 24566 | 26554 | - | GH18 |
| pfam | Rep_472_c_9 | Rep_472_c_9_16 | 26593 | 27750 | - | Pentaxin | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_472_c_9 | Rep_472_c_9_17 | 27759 | 28772 | - | GH18_BT1044-like |
| TC | Rep_472_c_9 | Rep_472_c_9_18 | 28795 | 30384 | - | 8.A.46.2.2 |
| TC | Rep_472_c_9 | Rep_472_c_9_19 | 30396 | 33782 | - | 1.B.14.6.13 |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_20 | 34088 | 36364 | - | GH92 |
| STP | Rep_472_c_9 | Rep_472_c_9_21 | 36394 | 37374 | - | FecR |
| TF | Rep_472_c_9 | Rep_472_c_9_22 | 37387 | 37980 | - | GerE |
| CAZyme | Rep_472_c_9 | Rep_472_c_9_23 | 38029 | 40254 | - | GH92 |
Gene ID: Rep_472_c_9_8
Type: TC
Location: 9659 - 10762 (+)
Type: TC
Location: 9659 - 10762 (+)
Gene ID: Rep_472_c_9_9
Type: TC
Location: 10769 - 15142 (+)
Type: TC
Location: 10769 - 15142 (+)
Gene ID: Rep_472_c_9_10
Type: CAZyme
Location: 15170 - 17497 (-)
Type: CAZyme
Location: 15170 - 17497 (-)
Gene ID: Rep_472_c_9_11
Type: CAZyme
Location: 17811 - 18779 (-)
Type: CAZyme
Location: 17811 - 18779 (-)
Gene ID: Rep_472_c_9_12
Type: pfam
Location: 18807 - 20114 (-)
Type: pfam
Location: 18807 - 20114 (-)
Gene ID: Rep_472_c_9_13
Type: CAZyme
Location: 20139 - 22412 (-)
Type: CAZyme
Location: 20139 - 22412 (-)
Gene ID: Rep_472_c_9_14
Type: CAZyme
Location: 22444 - 24456 (-)
Type: CAZyme
Location: 22444 - 24456 (-)
Gene ID: Rep_472_c_9_15
Type: CAZyme
Location: 24566 - 26554 (-)
Type: CAZyme
Location: 24566 - 26554 (-)
Gene ID: Rep_472_c_9_16
Type: pfam
Location: 26593 - 27750 (-)
Type: pfam
Location: 26593 - 27750 (-)
Gene ID: Rep_472_c_9_17
Type: pfam
Location: 27759 - 28772 (-)
Type: pfam
Location: 27759 - 28772 (-)
Gene ID: Rep_472_c_9_18
Type: TC
Location: 28795 - 30384 (-)
Type: TC
Location: 28795 - 30384 (-)
Gene ID: Rep_472_c_9_19
Type: TC
Location: 30396 - 33782 (-)
Type: TC
Location: 30396 - 33782 (-)
Gene ID: Rep_472_c_9_20
Type: CAZyme
Location: 34088 - 36364 (-)
Type: CAZyme
Location: 34088 - 36364 (-)
Gene ID: Rep_472_c_9_21
Type: STP
Location: 36394 - 37374 (-)
Type: STP
Location: 36394 - 37374 (-)
Gene ID: Rep_472_c_9_22
Type: TF
Location: 37387 - 37980 (-)
Type: TF
Location: 37387 - 37980 (-)
Gene ID: Rep_472_c_9_23
Type: CAZyme
Location: 38029 - 40254 (-)
Type: CAZyme
Location: 38029 - 40254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905203765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.