Cluster: Rep_472_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_472
- CGC Family ID: CGCFAM_01493
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_472_c_61 | Rep_472_c_61_8 | 16887 | 19262 | + | GH31_3 |
| TC | Rep_472_c_61 | Rep_472_c_61_9 | 19379 | 22528 | + | 1.B.14.6.1 |
| pfam | Rep_472_c_61 | Rep_472_c_61_10 | 22553 | 24238 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_472_c_61 | Rep_472_c_61_11 | 24279 | 25538 | + | GlcNAc_2-epim |
| CAZyme | Rep_472_c_61 | Rep_472_c_61_12 | 25544 | 28069 | + | GH9 |
| NULL(UNKNOWN) | Rep_472_c_61 | Rep_472_c_61_13 | 28062 | 29957 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_472_c_61 | Rep_472_c_61_14 | 30023 | 30805 | - | 3.A.1.15.15 |
Gene ID: Rep_472_c_61_8
Type: CAZyme
Location: 16887 - 19262 (+)
Type: CAZyme
Location: 16887 - 19262 (+)
Gene ID: Rep_472_c_61_9
Type: TC
Location: 19379 - 22528 (+)
Type: TC
Location: 19379 - 22528 (+)
Gene ID: Rep_472_c_61_10
Type: pfam
Location: 22553 - 24238 (+)
Type: pfam
Location: 22553 - 24238 (+)
Gene ID: Rep_472_c_61_11
Type: pfam
Location: 24279 - 25538 (+)
Type: pfam
Location: 24279 - 25538 (+)
Gene ID: Rep_472_c_61_12
Type: CAZyme
Location: 25544 - 28069 (+)
Type: CAZyme
Location: 25544 - 28069 (+)
Gene ID: Rep_472_c_61_13
Type:
Location: 28062 - 29957 (+)
Type:
Location: 28062 - 29957 (+)
Gene ID: Rep_472_c_61_14
Type: TC
Location: 30023 - 30805 (-)
Type: TC
Location: 30023 - 30805 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905203765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_472_c_61_13 | vegetarian > vegan | 1.09149 | 0.04544 |