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Cluster: Rep_472_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_472_c_1 Rep_472_c_1_1 109 3306 + 1.B.14.6.1
pfam Rep_472_c_1 Rep_472_c_1_2 3328 4935 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_472_c_1 Rep_472_c_1_3 4960 6324 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_472_c_1 Rep_472_c_1_4 6401 7780 + GH16_3
peptidase Rep_472_c_1 Rep_472_c_1_5 7804 9129 + M10.UPA
CAZyme Rep_472_c_1 Rep_472_c_1_6 9177 10475 + GH158
CAZyme Rep_472_c_1 Rep_472_c_1_7 10602 12731 + GH3
pfam Rep_472_c_1 Rep_472_c_1_8 12830 14110 - Enolase_C | Enolase_N | MR_MLE_C
TC Rep_472_c_1 Rep_472_c_1_9 14187 14990 - 9.B.158.1.1
Gene ID: Rep_472_c_1_1
Type: TC
Location: 109 - 3306 (+)
Gene ID: Rep_472_c_1_2
Type: pfam
Location: 3328 - 4935 (+)
Gene ID: Rep_472_c_1_3
Type:
Location: 4960 - 6324 (+)
Gene ID: Rep_472_c_1_4
Type: CAZyme
Location: 6401 - 7780 (+)
Gene ID: Rep_472_c_1_5
Type: peptidase
Location: 7804 - 9129 (+)
Gene ID: Rep_472_c_1_6
Type: CAZyme
Location: 9177 - 10475 (+)
Gene ID: Rep_472_c_1_7
Type: CAZyme
Location: 10602 - 12731 (+)
Gene ID: Rep_472_c_1_8
Type: pfam
Location: 12830 - 14110 (-)
Gene ID: Rep_472_c_1_9
Type: TC
Location: 14187 - 14990 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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