Cluster: Rep_46_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_46
- CGC Family ID: CGCFAM_01078
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_46_c_3 | Rep_46_c_3_51 | 68592 | 71771 | + | 1.B.14.6.1 |
| TC | Rep_46_c_3 | Rep_46_c_3_52 | 71839 | 73509 | + | 8.A.46.1.3 |
| pfam | Rep_46_c_3 | Rep_46_c_3_53 | 73666 | 74604 | + | Big_2 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_54 | 74658 | 75923 | + | GH16_3 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_55 | 75925 | 77175 | + | GH128 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_56 | 77178 | 78704 | + | GH16_3 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_57 | 78746 | 79723 | + | GH16_3 |
| TC | Rep_46_c_3 | Rep_46_c_3_58 | 79760 | 81130 | + | 2.A.2.3.6 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_59 | 81138 | 84518 | + | GH149 |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_60 | 84529 | 86889 | + | GH3 |
| NULL(UNKNOWN) | Rep_46_c_3 | Rep_46_c_3_61 | 86941 | 87885 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_46_c_3 | Rep_46_c_3_62 | 87915 | 89534 | + | CBM32 |
Gene ID: Rep_46_c_3_51
Type: TC
Location: 68592 - 71771 (+)
Type: TC
Location: 68592 - 71771 (+)
Gene ID: Rep_46_c_3_52
Type: TC
Location: 71839 - 73509 (+)
Type: TC
Location: 71839 - 73509 (+)
Gene ID: Rep_46_c_3_53
Type: pfam
Location: 73666 - 74604 (+)
Type: pfam
Location: 73666 - 74604 (+)
Gene ID: Rep_46_c_3_54
Type: CAZyme
Location: 74658 - 75923 (+)
Type: CAZyme
Location: 74658 - 75923 (+)
Gene ID: Rep_46_c_3_55
Type: CAZyme
Location: 75925 - 77175 (+)
Type: CAZyme
Location: 75925 - 77175 (+)
Gene ID: Rep_46_c_3_56
Type: CAZyme
Location: 77178 - 78704 (+)
Type: CAZyme
Location: 77178 - 78704 (+)
Gene ID: Rep_46_c_3_57
Type: CAZyme
Location: 78746 - 79723 (+)
Type: CAZyme
Location: 78746 - 79723 (+)
Gene ID: Rep_46_c_3_58
Type: TC
Location: 79760 - 81130 (+)
Type: TC
Location: 79760 - 81130 (+)
Gene ID: Rep_46_c_3_59
Type: CAZyme
Location: 81138 - 84518 (+)
Type: CAZyme
Location: 81138 - 84518 (+)
Gene ID: Rep_46_c_3_60
Type: CAZyme
Location: 84529 - 86889 (+)
Type: CAZyme
Location: 84529 - 86889 (+)
Gene ID: Rep_46_c_3_61
Type:
Location: 86941 - 87885 (+)
Type:
Location: 86941 - 87885 (+)
Gene ID: Rep_46_c_3_62
Type: CAZyme
Location: 87915 - 89534 (+)
Type: CAZyme
Location: 87915 - 89534 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Species
RF16 sp900542355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.