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Cluster: Rep_46_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_46_c_2 Rep_46_c_2_118 138565 139512 - 3.A.5.1.1
TC Rep_46_c_2 Rep_46_c_2_119 139683 140273 - 9.B.18.1.2
STP Rep_46_c_2 Rep_46_c_2_120 140270 141484 - Aminotran_1_2
pfam Rep_46_c_2 Rep_46_c_2_121 141512 142765 - AAA_14 | DUF4143
CAZyme Rep_46_c_2 Rep_46_c_2_122 142968 144167 - GT4
CAZyme Rep_46_c_2 Rep_46_c_2_123 144246 145295 - GT4
CAZyme Rep_46_c_2 Rep_46_c_2_124 145292 146194 - GT2
pfam Rep_46_c_2 Rep_46_c_2_125 146285 146923 - Hexapep | Hexapep_2
CAZyme Rep_46_c_2 Rep_46_c_2_126 146905 148095 - GT4
Gene ID: Rep_46_c_2_118
Type: TC
Location: 138565 - 139512 (-)
Gene ID: Rep_46_c_2_119
Type: TC
Location: 139683 - 140273 (-)
Gene ID: Rep_46_c_2_120
Type: STP
Location: 140270 - 141484 (-)
Gene ID: Rep_46_c_2_121
Type: pfam
Location: 141512 - 142765 (-)
Gene ID: Rep_46_c_2_122
Type: CAZyme
Location: 142968 - 144167 (-)
Gene ID: Rep_46_c_2_123
Type: CAZyme
Location: 144246 - 145295 (-)
Gene ID: Rep_46_c_2_124
Type: CAZyme
Location: 145292 - 146194 (-)
Gene ID: Rep_46_c_2_125
Type: pfam
Location: 146285 - 146923 (-)
Gene ID: Rep_46_c_2_126
Type: CAZyme
Location: 146905 - 148095 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Paludibacteraceae
→
Genus
RF16
→
Species
RF16 sp900542355

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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