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Cluster: Rep_46_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_46_c_1 Rep_46_c_1_102 138389 139204 + 1.B.42.1.2
pfam Rep_46_c_1 Rep_46_c_1_103 139316 140281 + Kelch_3 | Kelch_HCF | Kelch_KLHDC2_KLHL20_DRC7
TC Rep_46_c_1 Rep_46_c_1_104 140271 141749 + 1.B.73.2.2
pfam Rep_46_c_1 Rep_46_c_1_105 141794 142399 + DUF4254
CAZyme Rep_46_c_1 Rep_46_c_1_106 142450 143373 + GT9
CAZyme Rep_46_c_1 Rep_46_c_1_107 143370 144143 + GT2
pfam Rep_46_c_1 Rep_46_c_1_108 144124 144984 + Glycos_transf_2
pfam Rep_46_c_1 Rep_46_c_1_109 144975 145718 + Kdo
CAZyme Rep_46_c_1 Rep_46_c_1_110 145724 146821 - GT4
Gene ID: Rep_46_c_1_102
Type: TC
Location: 138389 - 139204 (+)
Gene ID: Rep_46_c_1_103
Type: pfam
Location: 139316 - 140281 (+)
Gene ID: Rep_46_c_1_104
Type: TC
Location: 140271 - 141749 (+)
Gene ID: Rep_46_c_1_105
Type: pfam
Location: 141794 - 142399 (+)
Gene ID: Rep_46_c_1_106
Type: CAZyme
Location: 142450 - 143373 (+)
Gene ID: Rep_46_c_1_107
Type: CAZyme
Location: 143370 - 144143 (+)
Gene ID: Rep_46_c_1_108
Type: pfam
Location: 144124 - 144984 (+)
Gene ID: Rep_46_c_1_109
Type: pfam
Location: 144975 - 145718 (+)
Gene ID: Rep_46_c_1_110
Type: CAZyme
Location: 145724 - 146821 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Paludibacteraceae
→
Genus
RF16
→
Species
RF16 sp900542355

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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