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Cluster: Rep_46_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_46_c_19 Rep_46_c_19_14 14361 17219 - 1.B.14.12.3
TC Rep_46_c_19 Rep_46_c_19_15 18130 21135 + 1.B.14.6.1
pfam Rep_46_c_19 Rep_46_c_19_16 21160 22686 + SusD_RagB | SusD-like_3
pfam Rep_46_c_19 Rep_46_c_19_17 22732 24183 + DUF5121
CAZyme Rep_46_c_19 Rep_46_c_19_18 24247 25752 + GH30_3
pfam Rep_46_c_19 Rep_46_c_19_19 25767 26828 + Lipase_GDSL_2
NULL(UNKNOWN) Rep_46_c_19 Rep_46_c_19_20 26841 28049 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_46_c_19 Rep_46_c_19_21 28107 30335 + GH3
Gene ID: Rep_46_c_19_14
Type: TC
Location: 14361 - 17219 (-)
Gene ID: Rep_46_c_19_15
Type: TC
Location: 18130 - 21135 (+)
Gene ID: Rep_46_c_19_16
Type: pfam
Location: 21160 - 22686 (+)
Gene ID: Rep_46_c_19_17
Type: pfam
Location: 22732 - 24183 (+)
Gene ID: Rep_46_c_19_18
Type: CAZyme
Location: 24247 - 25752 (+)
Gene ID: Rep_46_c_19_19
Type: pfam
Location: 25767 - 26828 (+)
Gene ID: Rep_46_c_19_20
Type:
Location: 26841 - 28049 (+)
Gene ID: Rep_46_c_19_21
Type: CAZyme
Location: 28107 - 30335 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Paludibacteraceae
→
Genus
RF16
→
Species
RF16 sp900542355

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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