Cluster: Rep_46_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_46
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_46_c_0 | Rep_46_c_0_189 | 211890 | 213122 | + | 9.B.156.3.1 |
| pfam | Rep_46_c_0 | Rep_46_c_0_190 | 213159 | 213611 | + | YbeY |
| pfam | Rep_46_c_0 | Rep_46_c_0_191 | 213671 | 214315 | + | DUF975 |
| CAZyme | Rep_46_c_0 | Rep_46_c_0_192 | 214441 | 216135 | + | PL1 |
| TC | Rep_46_c_0 | Rep_46_c_0_193 | 216355 | 217227 | - | 2.A.7.18.4 |
| CAZyme | Rep_46_c_0 | Rep_46_c_0_194 | 217306 | 218850 | - | GH31_19 |
| pfam | Rep_46_c_0 | Rep_46_c_0_195 | 218950 | 220395 | - | DUF4832 | DUF4874 |
| NULL(UNKNOWN) | Rep_46_c_0 | Rep_46_c_0_196 | 220548 | 221345 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_46_c_0 | Rep_46_c_0_197 | 221396 | 223072 | - | 8.A.46.1.5 |
| TC | Rep_46_c_0 | Rep_46_c_0_198 | 223094 | 226096 | - | 1.B.14.6.1 |
| CAZyme | Rep_46_c_0 | Rep_46_c_0_199 | 226179 | 228053 | - | GH36 |
Gene ID: Rep_46_c_0_189
Type: TC
Location: 211890 - 213122 (+)
Type: TC
Location: 211890 - 213122 (+)
Gene ID: Rep_46_c_0_190
Type: pfam
Location: 213159 - 213611 (+)
Type: pfam
Location: 213159 - 213611 (+)
Gene ID: Rep_46_c_0_191
Type: pfam
Location: 213671 - 214315 (+)
Type: pfam
Location: 213671 - 214315 (+)
Gene ID: Rep_46_c_0_192
Type: CAZyme
Location: 214441 - 216135 (+)
Type: CAZyme
Location: 214441 - 216135 (+)
Gene ID: Rep_46_c_0_193
Type: TC
Location: 216355 - 217227 (-)
Type: TC
Location: 216355 - 217227 (-)
Gene ID: Rep_46_c_0_194
Type: CAZyme
Location: 217306 - 218850 (-)
Type: CAZyme
Location: 217306 - 218850 (-)
Gene ID: Rep_46_c_0_195
Type: pfam
Location: 218950 - 220395 (-)
Type: pfam
Location: 218950 - 220395 (-)
Gene ID: Rep_46_c_0_196
Type:
Location: 220548 - 221345 (-)
Type:
Location: 220548 - 221345 (-)
Gene ID: Rep_46_c_0_197
Type: TC
Location: 221396 - 223072 (-)
Type: TC
Location: 221396 - 223072 (-)
Gene ID: Rep_46_c_0_198
Type: TC
Location: 223094 - 226096 (-)
Type: TC
Location: 223094 - 226096 (-)
Gene ID: Rep_46_c_0_199
Type: CAZyme
Location: 226179 - 228053 (-)
Type: CAZyme
Location: 226179 - 228053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Species
RF16 sp900542355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.