Cluster: Rep_46_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_46
- CGC Family ID: CGCFAM_06370
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_46_c_7 | Rep_46_c_7_80 | 105388 | 107232 | + | GH13_46 |
| NULL(UNKNOWN) | Rep_46_c_7 | Rep_46_c_7_81 | 107523 | 108881 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_46_c_7 | Rep_46_c_7_82 | 109084 | 109743 | - | ACPS |
| TC | Rep_46_c_7 | Rep_46_c_7_83 | 109807 | 111039 | - | 2.A.1.35.1 |
| TC | Rep_46_c_7 | Rep_46_c_7_84 | 111144 | 112805 | - | 2.A.81.1.2 |
| NULL(UNKNOWN) | Rep_46_c_7 | Rep_46_c_7_85 | 112812 | 112991 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_46_c_7 | Rep_46_c_7_86 | 113227 | 114087 | + | 3.A.1.103.4 |
Gene ID: Rep_46_c_7_80
Type: CAZyme
Location: 105388 - 107232 (+)
Type: CAZyme
Location: 105388 - 107232 (+)
Gene ID: Rep_46_c_7_81
Type:
Location: 107523 - 108881 (+)
Type:
Location: 107523 - 108881 (+)
Gene ID: Rep_46_c_7_82
Type: pfam
Location: 109084 - 109743 (-)
Type: pfam
Location: 109084 - 109743 (-)
Gene ID: Rep_46_c_7_83
Type: TC
Location: 109807 - 111039 (-)
Type: TC
Location: 109807 - 111039 (-)
Gene ID: Rep_46_c_7_84
Type: TC
Location: 111144 - 112805 (-)
Type: TC
Location: 111144 - 112805 (-)
Gene ID: Rep_46_c_7_85
Type:
Location: 112812 - 112991 (-)
Type:
Location: 112812 - 112991 (-)
Gene ID: Rep_46_c_7_86
Type: TC
Location: 113227 - 114087 (+)
Type: TC
Location: 113227 - 114087 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Species
RF16 sp900542355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.