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Cluster: Rep_461_CGC99

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_45 Rep_461_c_45_17 15869 18391 + CE20 | GH105
CAZyme Rep_461_c_45 Rep_461_c_45_18 18411 21224 + GH106
CAZyme Rep_461_c_45 Rep_461_c_45_19 21231 22679 + GH28
pfam Rep_461_c_45 Rep_461_c_45_20 22860 24317 + FGGY_N | FGGY_C
pfam Rep_461_c_45 Rep_461_c_45_21 24382 25635 + RhaA
TC Rep_461_c_45 Rep_461_c_45_22 25734 26765 + 2.A.7.6.1
pfam Rep_461_c_45 Rep_461_c_45_23 26861 27670 + Aldolase_II
CAZyme Rep_461_c_45 Rep_461_c_45_24 27726 29024 + GH105
TF Rep_461_c_45 Rep_461_c_45_25 29153 30079 + HTH_AraC
TC Rep_461_c_45 Rep_461_c_45_26 30253 32634 + 1.B.14.3.1
Gene ID: Rep_461_c_45_17
Type: CAZyme
Location: 15869 - 18391 (+)
Gene ID: Rep_461_c_45_18
Type: CAZyme
Location: 18411 - 21224 (+)
Gene ID: Rep_461_c_45_19
Type: CAZyme
Location: 21231 - 22679 (+)
Gene ID: Rep_461_c_45_20
Type: pfam
Location: 22860 - 24317 (+)
Gene ID: Rep_461_c_45_21
Type: pfam
Location: 24382 - 25635 (+)
Gene ID: Rep_461_c_45_22
Type: TC
Location: 25734 - 26765 (+)
Gene ID: Rep_461_c_45_23
Type: pfam
Location: 26861 - 27670 (+)
Gene ID: Rep_461_c_45_24
Type: CAZyme
Location: 27726 - 29024 (+)
Gene ID: Rep_461_c_45_25
Type: TF
Location: 29153 - 30079 (+)
Gene ID: Rep_461_c_45_26
Type: TC
Location: 30253 - 32634 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_45_23 vegan > omnivore 1.39589 0.00307

🧭 Explore Read Mapping of CGC

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