Cluster: Rep_461_CGC95
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_461
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_38 | Rep_461_c_38_15 | 13751 | 15199 | + | 1.I.1.1.3 |
| STP | Rep_461_c_38 | Rep_461_c_38_16 | 15407 | 17011 | + | HATPase_c | HisKA |
| pfam | Rep_461_c_38 | Rep_461_c_38_17 | 17051 | 17908 | + | Lactamase_B |
| CAZyme | Rep_461_c_38 | Rep_461_c_38_18 | 17997 | 21359 | - | GH2 |
| CAZyme | Rep_461_c_38 | Rep_461_c_38_19 | 21356 | 23257 | - | PL33_1 |
| CAZyme | Rep_461_c_38 | Rep_461_c_38_20 | 23290 | 24672 | - | GH109 |
| CAZyme | Rep_461_c_38 | Rep_461_c_38_21 | 24687 | 26126 | - | GH29 |
| CAZyme | Rep_461_c_38 | Rep_461_c_38_22 | 26123 | 29428 | - | GH105 | GH2 |
| NULL(UNKNOWN) | Rep_461_c_38 | Rep_461_c_38_23 | 29479 | 29916 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_461_c_38 | Rep_461_c_38_24 | 29758 | 33804 | - | HTH_AraC |
| TC | Rep_461_c_38 | Rep_461_c_38_25 | 34143 | 37442 | + | 1.B.14.6.1 |
Gene ID: Rep_461_c_38_15
Type: TC
Location: 13751 - 15199 (+)
Type: TC
Location: 13751 - 15199 (+)
Gene ID: Rep_461_c_38_16
Type: STP
Location: 15407 - 17011 (+)
Type: STP
Location: 15407 - 17011 (+)
Gene ID: Rep_461_c_38_17
Type: pfam
Location: 17051 - 17908 (+)
Type: pfam
Location: 17051 - 17908 (+)
Gene ID: Rep_461_c_38_18
Type: CAZyme
Location: 17997 - 21359 (-)
Type: CAZyme
Location: 17997 - 21359 (-)
Gene ID: Rep_461_c_38_19
Type: CAZyme
Location: 21356 - 23257 (-)
Type: CAZyme
Location: 21356 - 23257 (-)
Gene ID: Rep_461_c_38_20
Type: CAZyme
Location: 23290 - 24672 (-)
Type: CAZyme
Location: 23290 - 24672 (-)
Gene ID: Rep_461_c_38_21
Type: CAZyme
Location: 24687 - 26126 (-)
Type: CAZyme
Location: 24687 - 26126 (-)
Gene ID: Rep_461_c_38_22
Type: CAZyme
Location: 26123 - 29428 (-)
Type: CAZyme
Location: 26123 - 29428 (-)
Gene ID: Rep_461_c_38_23
Type:
Location: 29479 - 29916 (+)
Type:
Location: 29479 - 29916 (+)
Gene ID: Rep_461_c_38_24
Type: TF
Location: 29758 - 33804 (-)
Type: TF
Location: 29758 - 33804 (-)
Gene ID: Rep_461_c_38_25
Type: TC
Location: 34143 - 37442 (+)
Type: TC
Location: 34143 - 37442 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_38_15 | vegan > omnivore | 2.11509 | 0.00625 |
| Rep_461_c_38_15 | vegetarian > omnivore | 2.54000 | 0.00038 |
| Rep_461_c_38_17 | vegetarian > omnivore | 1.34223 | 0.00038 |