Cluster: Rep_461_CGC89
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_11292
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_32 | Rep_461_c_32_27 | 31852 | 34173 | - | 1.B.14.1.4 |
| NULL(UNKNOWN) | Rep_461_c_32 | Rep_461_c_32_28 | 34401 | 34742 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_461_c_32 | Rep_461_c_32_29 | 34786 | 36531 | - | Metallophos | 5_nucleotid_C |
| TC | Rep_461_c_32 | Rep_461_c_32_30 | 36541 | 38475 | - | 2.A.21.9.1 |
| pfam | Rep_461_c_32 | Rep_461_c_32_31 | 38651 | 39595 | - | Glycos_transf_4 |
| pfam | Rep_461_c_32 | Rep_461_c_32_32 | 39633 | 40610 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind |
| CAZyme | Rep_461_c_32 | Rep_461_c_32_33 | 40618 | 41472 | - | CE4 |
| pfam | Rep_461_c_32 | Rep_461_c_32_34 | 41492 | 42073 | - | Hexapep | Hexapep_2 |
| CAZyme | Rep_461_c_32 | Rep_461_c_32_35 | 42070 | 42858 | - | GT26 |
| CAZyme | Rep_461_c_32 | Rep_461_c_32_36 | 42863 | 44086 | - | GT4 |
| CAZyme | Rep_461_c_32 | Rep_461_c_32_37 | 44086 | 44817 | - | CE4 |
| CAZyme | Rep_461_c_32 | Rep_461_c_32_38 | 44837 | 45862 | - | GT4 |
Gene ID: Rep_461_c_32_27
Type: TC
Location: 31852 - 34173 (-)
Type: TC
Location: 31852 - 34173 (-)
Gene ID: Rep_461_c_32_28
Type:
Location: 34401 - 34742 (-)
Type:
Location: 34401 - 34742 (-)
Gene ID: Rep_461_c_32_29
Type: pfam
Location: 34786 - 36531 (-)
Type: pfam
Location: 34786 - 36531 (-)
Gene ID: Rep_461_c_32_30
Type: TC
Location: 36541 - 38475 (-)
Type: TC
Location: 36541 - 38475 (-)
Gene ID: Rep_461_c_32_31
Type: pfam
Location: 38651 - 39595 (-)
Type: pfam
Location: 38651 - 39595 (-)
Gene ID: Rep_461_c_32_32
Type: pfam
Location: 39633 - 40610 (-)
Type: pfam
Location: 39633 - 40610 (-)
Gene ID: Rep_461_c_32_33
Type: CAZyme
Location: 40618 - 41472 (-)
Type: CAZyme
Location: 40618 - 41472 (-)
Gene ID: Rep_461_c_32_34
Type: pfam
Location: 41492 - 42073 (-)
Type: pfam
Location: 41492 - 42073 (-)
Gene ID: Rep_461_c_32_35
Type: CAZyme
Location: 42070 - 42858 (-)
Type: CAZyme
Location: 42070 - 42858 (-)
Gene ID: Rep_461_c_32_36
Type: CAZyme
Location: 42863 - 44086 (-)
Type: CAZyme
Location: 42863 - 44086 (-)
Gene ID: Rep_461_c_32_37
Type: CAZyme
Location: 44086 - 44817 (-)
Type: CAZyme
Location: 44086 - 44817 (-)
Gene ID: Rep_461_c_32_38
Type: CAZyme
Location: 44837 - 45862 (-)
Type: CAZyme
Location: 44837 - 45862 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_32_28 | vegan > omnivore | 2.60887 | 0.00625 |
| Rep_461_c_32_28 | vegetarian > omnivore | 2.77920 | 0.00038 |
| Rep_461_c_32_31 | vegan > omnivore | 1.00597 | 0.00625 |
| Rep_461_c_32_32 | vegan > omnivore | 1.48021 | 0.00414 |