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Cluster: Rep_461_CGC88

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_31 Rep_461_c_31_14 10478 11842 - 2.A.6.2.20
TC Rep_461_c_31 Rep_461_c_31_15 11839 15042 - 2.A.6.2.22
TC Rep_461_c_31 Rep_461_c_31_16 15046 16203 - 2.A.6.2.47
TF Rep_461_c_31 Rep_461_c_31_17 16376 17212 + HTH_AraC
TF Rep_461_c_31 Rep_461_c_31_18 17247 18296 - LacI
CAZyme Rep_461_c_31 Rep_461_c_31_19 18597 20024 + GH28
pfam Rep_461_c_31 Rep_461_c_31_20 20071 21312 + Beta-AFase-like_GH127_cat
pfam Rep_461_c_31 Rep_461_c_31_21 21316 22095 + Glucosamine_iso
TC Rep_461_c_31 Rep_461_c_31_22 22109 25033 + 1.B.14.12.2
CAZyme Rep_461_c_31 Rep_461_c_31_23 25109 27964 + GH105 | PL35
TC Rep_461_c_31 Rep_461_c_31_24 27968 29416 + 2.A.1.14.2
CAZyme Rep_461_c_31 Rep_461_c_31_25 29429 31342 + PL37
CAZyme Rep_461_c_31 Rep_461_c_31_26 31422 33566 + GH97
CAZyme Rep_461_c_31 Rep_461_c_31_27 33617 36958 + GH105
CAZyme Rep_461_c_31 Rep_461_c_31_28 36969 39434 + GH20
CAZyme Rep_461_c_31 Rep_461_c_31_29 39599 41932 + GH20
TF Rep_461_c_31 Rep_461_c_31_30 42138 42629 + GerE
NULL(UNKNOWN) Rep_461_c_31 Rep_461_c_31_31 42643 43248 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_461_c_31 Rep_461_c_31_32 43229 44716 - 2.A.50.2.1
Gene ID: Rep_461_c_31_14
Type: TC
Location: 10478 - 11842 (-)
Gene ID: Rep_461_c_31_15
Type: TC
Location: 11839 - 15042 (-)
Gene ID: Rep_461_c_31_16
Type: TC
Location: 15046 - 16203 (-)
Gene ID: Rep_461_c_31_17
Type: TF
Location: 16376 - 17212 (+)
Gene ID: Rep_461_c_31_18
Type: TF
Location: 17247 - 18296 (-)
Gene ID: Rep_461_c_31_19
Type: CAZyme
Location: 18597 - 20024 (+)
Gene ID: Rep_461_c_31_20
Type: pfam
Location: 20071 - 21312 (+)
Gene ID: Rep_461_c_31_21
Type: pfam
Location: 21316 - 22095 (+)
Gene ID: Rep_461_c_31_22
Type: TC
Location: 22109 - 25033 (+)
Gene ID: Rep_461_c_31_23
Type: CAZyme
Location: 25109 - 27964 (+)
Gene ID: Rep_461_c_31_24
Type: TC
Location: 27968 - 29416 (+)
Gene ID: Rep_461_c_31_25
Type: CAZyme
Location: 29429 - 31342 (+)
Gene ID: Rep_461_c_31_26
Type: CAZyme
Location: 31422 - 33566 (+)
Gene ID: Rep_461_c_31_27
Type: CAZyme
Location: 33617 - 36958 (+)
Gene ID: Rep_461_c_31_28
Type: CAZyme
Location: 36969 - 39434 (+)
Gene ID: Rep_461_c_31_29
Type: CAZyme
Location: 39599 - 41932 (+)
Gene ID: Rep_461_c_31_30
Type: TF
Location: 42138 - 42629 (+)
Gene ID: Rep_461_c_31_31
Type:
Location: 42643 - 43248 (+)
Gene ID: Rep_461_c_31_32
Type: TC
Location: 43229 - 44716 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_31_14 vegan > omnivore 1.01128 0.00625
Rep_461_c_31_14 vegetarian > omnivore 1.09265 0.00038
Rep_461_c_31_16 vegan > omnivore 1.26854 0.00625
Rep_461_c_31_16 vegetarian > omnivore 1.44716 0.00038
Rep_461_c_31_17 vegan > omnivore 2.11166 0.00625
Rep_461_c_31_17 vegetarian > omnivore 2.61899 0.00038

🧭 Explore Read Mapping of CGC

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