Cluster: Rep_461_CGC76
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_02167
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_23 | Rep_461_c_23_27 | 36844 | 38550 | + | 3.A.3.7.2 |
| TC | Rep_461_c_23 | Rep_461_c_23_28 | 38570 | 40618 | + | 3.A.3.7.2 |
| TC | Rep_461_c_23 | Rep_461_c_23_29 | 40633 | 41205 | + | 3.A.3.7.2 |
| NULL(UNKNOWN) | Rep_461_c_23 | Rep_461_c_23_30 | 41443 | 42192 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_461_c_23 | Rep_461_c_23_31 | 42417 | 43541 | + | KdpD |
| TC | Rep_461_c_23 | Rep_461_c_23_32 | 43563 | 45002 | + | 2.A.21.9.1 |
| peptidase | Rep_461_c_23 | Rep_461_c_23_33 | 45051 | 47300 | - | S09.UPB |
| CAZyme | Rep_461_c_23 | Rep_461_c_23_34 | 47314 | 49719 | - | GH127 |
| peptidase | Rep_461_c_23 | Rep_461_c_23_35 | 49724 | 51337 | - | M43.UPB |
| NULL(UNKNOWN) | Rep_461_c_23 | Rep_461_c_23_36 | 51340 | 51816 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_23 | Rep_461_c_23_37 | 51826 | 54225 | - | CBM32 | GH43_34 |
| CAZyme | Rep_461_c_23 | Rep_461_c_23_38 | 54321 | 57047 | - | GH97 |
| pfam | Rep_461_c_23 | Rep_461_c_23_39 | 57231 | 58982 | - | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | Rep_461_c_23 | Rep_461_c_23_40 | 59391 | 61826 | + | GH127 |
| TC | Rep_461_c_23 | Rep_461_c_23_41 | 61896 | 64997 | + | 1.B.14.6.1 |
Gene ID: Rep_461_c_23_27
Type: TC
Location: 36844 - 38550 (+)
Type: TC
Location: 36844 - 38550 (+)
Gene ID: Rep_461_c_23_28
Type: TC
Location: 38570 - 40618 (+)
Type: TC
Location: 38570 - 40618 (+)
Gene ID: Rep_461_c_23_29
Type: TC
Location: 40633 - 41205 (+)
Type: TC
Location: 40633 - 41205 (+)
Gene ID: Rep_461_c_23_30
Type:
Location: 41443 - 42192 (+)
Type:
Location: 41443 - 42192 (+)
Gene ID: Rep_461_c_23_31
Type: pfam
Location: 42417 - 43541 (+)
Type: pfam
Location: 42417 - 43541 (+)
Gene ID: Rep_461_c_23_32
Type: TC
Location: 43563 - 45002 (+)
Type: TC
Location: 43563 - 45002 (+)
Gene ID: Rep_461_c_23_33
Type: peptidase
Location: 45051 - 47300 (-)
Type: peptidase
Location: 45051 - 47300 (-)
Gene ID: Rep_461_c_23_34
Type: CAZyme
Location: 47314 - 49719 (-)
Type: CAZyme
Location: 47314 - 49719 (-)
Gene ID: Rep_461_c_23_35
Type: peptidase
Location: 49724 - 51337 (-)
Type: peptidase
Location: 49724 - 51337 (-)
Gene ID: Rep_461_c_23_36
Type:
Location: 51340 - 51816 (-)
Type:
Location: 51340 - 51816 (-)
Gene ID: Rep_461_c_23_37
Type: CAZyme
Location: 51826 - 54225 (-)
Type: CAZyme
Location: 51826 - 54225 (-)
Gene ID: Rep_461_c_23_38
Type: CAZyme
Location: 54321 - 57047 (-)
Type: CAZyme
Location: 54321 - 57047 (-)
Gene ID: Rep_461_c_23_39
Type: pfam
Location: 57231 - 58982 (-)
Type: pfam
Location: 57231 - 58982 (-)
Gene ID: Rep_461_c_23_40
Type: CAZyme
Location: 59391 - 61826 (+)
Type: CAZyme
Location: 59391 - 61826 (+)
Gene ID: Rep_461_c_23_41
Type: TC
Location: 61896 - 64997 (+)
Type: TC
Location: 61896 - 64997 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_23_30 | vegan > omnivore | 1.16716 | 0.00625 |
| Rep_461_c_23_30 | vegetarian > omnivore | 2.46793 | 0.00038 |
| Rep_461_c_23_30 | vegetarian > vegan | 1.30077 | 0.02765 |