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Cluster: Rep_461_CGC72

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_21 Rep_461_c_21_5 3551 4669 + 3.A.11.1.3
TF Rep_461_c_21 Rep_461_c_21_6 4728 8711 + HTH_AraC
CAZyme Rep_461_c_21 Rep_461_c_21_7 8884 11319 + GH2
TC Rep_461_c_21 Rep_461_c_21_8 11529 14591 + 1.B.14.6.1
pfam Rep_461_c_21 Rep_461_c_21_9 14602 16380 + SusD_RagB | SusD-like_3
CAZyme Rep_461_c_21 Rep_461_c_21_10 16590 19109 + GH51_2
STP Rep_461_c_21 Rep_461_c_21_11 19440 20000 + Sigma70_r2 | Sigma70_r4_2
STP Rep_461_c_21 Rep_461_c_21_12 20074 21021 + FecR
TC Rep_461_c_21 Rep_461_c_21_13 21075 24455 + 1.B.14.6.1
TC Rep_461_c_21 Rep_461_c_21_14 24472 26091 + 8.A.46.1.1
CAZyme Rep_461_c_21 Rep_461_c_21_15 26370 29501 + CBM67 | GH78
Gene ID: Rep_461_c_21_5
Type: TC
Location: 3551 - 4669 (+)
Gene ID: Rep_461_c_21_6
Type: TF
Location: 4728 - 8711 (+)
Gene ID: Rep_461_c_21_7
Type: CAZyme
Location: 8884 - 11319 (+)
Gene ID: Rep_461_c_21_8
Type: TC
Location: 11529 - 14591 (+)
Gene ID: Rep_461_c_21_9
Type: pfam
Location: 14602 - 16380 (+)
Gene ID: Rep_461_c_21_10
Type: CAZyme
Location: 16590 - 19109 (+)
Gene ID: Rep_461_c_21_11
Type: STP
Location: 19440 - 20000 (+)
Gene ID: Rep_461_c_21_12
Type: STP
Location: 20074 - 21021 (+)
Gene ID: Rep_461_c_21_13
Type: TC
Location: 21075 - 24455 (+)
Gene ID: Rep_461_c_21_14
Type: TC
Location: 24472 - 26091 (+)
Gene ID: Rep_461_c_21_15
Type: CAZyme
Location: 26370 - 29501 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_21_11 vegan > omnivore 2.06581 0.00625
Rep_461_c_21_11 vegetarian > omnivore 2.28930 0.00038
Rep_461_c_21_12 vegan > omnivore 2.35076 0.00625
Rep_461_c_21_12 vegetarian > omnivore 1.37943 0.00038

🧭 Explore Read Mapping of CGC

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