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Cluster: Rep_461_CGC70

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_20 Rep_461_c_20_34 43163 45388 + GH92
TF Rep_461_c_20 Rep_461_c_20_35 45419 45979 + GerE
STP Rep_461_c_20 Rep_461_c_20_36 46014 47015 + FecR
CAZyme Rep_461_c_20 Rep_461_c_20_37 47073 49352 + GH92
TC Rep_461_c_20 Rep_461_c_20_38 49545 52907 + 1.B.14.6.13
TC Rep_461_c_20 Rep_461_c_20_39 52912 54528 + 8.A.46.2.2
pfam Rep_461_c_20 Rep_461_c_20_40 54550 55551 + GH18_BT1044-like
pfam Rep_461_c_20 Rep_461_c_20_41 55560 56726 + BT_3987-like_N | Laminin_G_3
CAZyme Rep_461_c_20 Rep_461_c_20_42 56757 58700 + GH18
CAZyme Rep_461_c_20 Rep_461_c_20_43 58862 60835 + GH97
CAZyme Rep_461_c_20 Rep_461_c_20_44 60862 63147 + GH92
pfam Rep_461_c_20 Rep_461_c_20_45 63164 64474 + MFS_1 | MFS_1
CAZyme Rep_461_c_20 Rep_461_c_20_46 64506 65477 + GH130_2
CAZyme Rep_461_c_20 Rep_461_c_20_47 65508 67760 + GH92
Gene ID: Rep_461_c_20_34
Type: CAZyme
Location: 43163 - 45388 (+)
Gene ID: Rep_461_c_20_35
Type: TF
Location: 45419 - 45979 (+)
Gene ID: Rep_461_c_20_36
Type: STP
Location: 46014 - 47015 (+)
Gene ID: Rep_461_c_20_37
Type: CAZyme
Location: 47073 - 49352 (+)
Gene ID: Rep_461_c_20_38
Type: TC
Location: 49545 - 52907 (+)
Gene ID: Rep_461_c_20_39
Type: TC
Location: 52912 - 54528 (+)
Gene ID: Rep_461_c_20_40
Type: pfam
Location: 54550 - 55551 (+)
Gene ID: Rep_461_c_20_41
Type: pfam
Location: 55560 - 56726 (+)
Gene ID: Rep_461_c_20_42
Type: CAZyme
Location: 56757 - 58700 (+)
Gene ID: Rep_461_c_20_43
Type: CAZyme
Location: 58862 - 60835 (+)
Gene ID: Rep_461_c_20_44
Type: CAZyme
Location: 60862 - 63147 (+)
Gene ID: Rep_461_c_20_45
Type: pfam
Location: 63164 - 64474 (+)
Gene ID: Rep_461_c_20_46
Type: CAZyme
Location: 64506 - 65477 (+)
Gene ID: Rep_461_c_20_47
Type: CAZyme
Location: 65508 - 67760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_20_35 vegan > omnivore 1.94826 0.00625
Rep_461_c_20_35 vegetarian > omnivore 1.48164 0.00038

🧭 Explore Read Mapping of CGC

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