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Cluster: Rep_461_CGC69

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_20 Rep_461_c_20_20 25174 25800 + 2.A.124.1.4
TC Rep_461_c_20 Rep_461_c_20_21 25795 26457 - 9.B.104.3.2
CAZyme Rep_461_c_20 Rep_461_c_20_22 26651 28591 + GH133
CAZyme Rep_461_c_20 Rep_461_c_20_23 28606 29871 + GT4
CAZyme Rep_461_c_20 Rep_461_c_20_24 29975 31378 + GH57
pfam Rep_461_c_20 Rep_461_c_20_25 31470 33020 - DUF4270
CAZyme Rep_461_c_20 Rep_461_c_20_26 33041 33865 - GT5
Gene ID: Rep_461_c_20_20
Type: TC
Location: 25174 - 25800 (+)
Gene ID: Rep_461_c_20_21
Type: TC
Location: 25795 - 26457 (-)
Gene ID: Rep_461_c_20_22
Type: CAZyme
Location: 26651 - 28591 (+)
Gene ID: Rep_461_c_20_23
Type: CAZyme
Location: 28606 - 29871 (+)
Gene ID: Rep_461_c_20_24
Type: CAZyme
Location: 29975 - 31378 (+)
Gene ID: Rep_461_c_20_25
Type: pfam
Location: 31470 - 33020 (-)
Gene ID: Rep_461_c_20_26
Type: CAZyme
Location: 33041 - 33865 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_20_20 vegan > omnivore 2.21000 0.00625
Rep_461_c_20_20 vegetarian > omnivore 1.43524 0.00038
Rep_461_c_20_21 vegan > omnivore 2.12524 0.00625
Rep_461_c_20_21 vegetarian > omnivore 1.71448 0.00038

🧭 Explore Read Mapping of CGC

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