Cluster: Rep_461_CGC67
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_461
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_19 | Rep_461_c_19_39 | 58118 | 59320 | + | GH76 |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_40 | 59352 | 60818 | + | GH125 |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_41 | 60833 | 61954 | + | GH105 |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_42 | 61976 | 63922 | + | GH97 |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_43 | 63936 | 66086 | + | GH67 |
| NULL(UNKNOWN) | Rep_461_c_19 | Rep_461_c_19_44 | 66098 | 68026 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_461_c_19 | Rep_461_c_19_45 | 68097 | 71207 | + | 1.B.14.6.1 |
| TC | Rep_461_c_19 | Rep_461_c_19_46 | 71231 | 73045 | + | 8.A.46.1.6 |
| pfam | Rep_461_c_19 | Rep_461_c_19_47 | 73722 | 75509 | + | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_48 | 75613 | 79224 | - | GH38 |
| TF | Rep_461_c_19 | Rep_461_c_19_49 | 79450 | 83499 | + | HTH_AraC |
| pfam | Rep_461_c_19 | Rep_461_c_19_50 | 83517 | 86132 | - | MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III |
| CAZyme | Rep_461_c_19 | Rep_461_c_19_51 | 86601 | 88067 | + | GH30_2 |
Gene ID: Rep_461_c_19_39
Type: CAZyme
Location: 58118 - 59320 (+)
Type: CAZyme
Location: 58118 - 59320 (+)
Gene ID: Rep_461_c_19_40
Type: CAZyme
Location: 59352 - 60818 (+)
Type: CAZyme
Location: 59352 - 60818 (+)
Gene ID: Rep_461_c_19_41
Type: CAZyme
Location: 60833 - 61954 (+)
Type: CAZyme
Location: 60833 - 61954 (+)
Gene ID: Rep_461_c_19_42
Type: CAZyme
Location: 61976 - 63922 (+)
Type: CAZyme
Location: 61976 - 63922 (+)
Gene ID: Rep_461_c_19_43
Type: CAZyme
Location: 63936 - 66086 (+)
Type: CAZyme
Location: 63936 - 66086 (+)
Gene ID: Rep_461_c_19_44
Type:
Location: 66098 - 68026 (+)
Type:
Location: 66098 - 68026 (+)
Gene ID: Rep_461_c_19_45
Type: TC
Location: 68097 - 71207 (+)
Type: TC
Location: 68097 - 71207 (+)
Gene ID: Rep_461_c_19_46
Type: TC
Location: 71231 - 73045 (+)
Type: TC
Location: 71231 - 73045 (+)
Gene ID: Rep_461_c_19_47
Type: pfam
Location: 73722 - 75509 (+)
Type: pfam
Location: 73722 - 75509 (+)
Gene ID: Rep_461_c_19_48
Type: CAZyme
Location: 75613 - 79224 (-)
Type: CAZyme
Location: 75613 - 79224 (-)
Gene ID: Rep_461_c_19_49
Type: TF
Location: 79450 - 83499 (+)
Type: TF
Location: 79450 - 83499 (+)
Gene ID: Rep_461_c_19_50
Type: pfam
Location: 83517 - 86132 (-)
Type: pfam
Location: 83517 - 86132 (-)
Gene ID: Rep_461_c_19_51
Type: CAZyme
Location: 86601 - 88067 (+)
Type: CAZyme
Location: 86601 - 88067 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_19_40 | vegetarian > vegan | 1.01151 | 0.02439 |
| Rep_461_c_19_46 | vegan > omnivore | 2.38384 | 0.00625 |
| Rep_461_c_19_47 | vegetarian > omnivore | 1.55915 | 0.00038 |