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Cluster: Rep_461_CGC66

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_19 Rep_461_c_19_3 4240 6057 - GH2
STP Rep_461_c_19 Rep_461_c_19_4 6669 9251 + Reg_prop | Reg_prop | Y_Y_Y
TC Rep_461_c_19 Rep_461_c_19_5 9706 13032 + 1.B.14.6.1
pfam Rep_461_c_19 Rep_461_c_19_6 13056 14753 + SusD_RagB | SusD-like_3
CAZyme Rep_461_c_19 Rep_461_c_19_7 14838 17432 + GH115
CAZyme Rep_461_c_19 Rep_461_c_19_8 17448 20291 + GH2
NULL(UNKNOWN) Rep_461_c_19 Rep_461_c_19_9 20467 20835 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_461_c_19 Rep_461_c_19_10 20985 22625 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_461_c_19 Rep_461_c_19_11 22843 24717 + 1.C.39.4.5
Gene ID: Rep_461_c_19_3
Type: CAZyme
Location: 4240 - 6057 (-)
Gene ID: Rep_461_c_19_4
Type: STP
Location: 6669 - 9251 (+)
Gene ID: Rep_461_c_19_5
Type: TC
Location: 9706 - 13032 (+)
Gene ID: Rep_461_c_19_6
Type: pfam
Location: 13056 - 14753 (+)
Gene ID: Rep_461_c_19_7
Type: CAZyme
Location: 14838 - 17432 (+)
Gene ID: Rep_461_c_19_8
Type: CAZyme
Location: 17448 - 20291 (+)
Gene ID: Rep_461_c_19_9
Type:
Location: 20467 - 20835 (-)
Gene ID: Rep_461_c_19_10
Type:
Location: 20985 - 22625 (-)
Gene ID: Rep_461_c_19_11
Type: TC
Location: 22843 - 24717 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_19_7 vegan > omnivore 1.88167 0.00625
Rep_461_c_19_8 vegan > omnivore 1.94930 0.00625

🧭 Explore Read Mapping of CGC

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