Cluster: Rep_461_CGC65
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_461
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_18 | Rep_461_c_18_27 | 41409 | 42785 | + | 2.A.2.6.2 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_28 | 43013 | 45325 | + | GH65 |
| pfam | Rep_461_c_18 | Rep_461_c_18_29 | 45421 | 46473 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_461_c_18 | Rep_461_c_18_30 | 46541 | 49573 | + | 2.A.6.2.37 |
| pfam | Rep_461_c_18 | Rep_461_c_18_31 | 49662 | 50933 | + | OEP | OEP |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_32 | 51075 | 53342 | - | GH92 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_33 | 53361 | 54494 | - | GH183 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_34 | 54551 | 56491 | - | GH172 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_35 | 56538 | 57986 | - | GH125 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_36 | 58024 | 60000 | - | GH97 |
| pfam | Rep_461_c_18 | Rep_461_c_18_37 | 60123 | 60881 | - | DUF3823 | DUF3823_C |
| pfam | Rep_461_c_18 | Rep_461_c_18_38 | 60901 | 62817 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_18 | Rep_461_c_18_39 | 62833 | 66270 | - | 1.B.14.6.1 |
| STP | Rep_461_c_18 | Rep_461_c_18_40 | 66403 | 67428 | - | FecR |
| TF | Rep_461_c_18 | Rep_461_c_18_41 | 67590 | 68201 | - | GerE |
| TC | Rep_461_c_18 | Rep_461_c_18_42 | 68425 | 69660 | - | 3.B.1.1.5 |
Gene ID: Rep_461_c_18_27
Type: TC
Location: 41409 - 42785 (+)
Type: TC
Location: 41409 - 42785 (+)
Gene ID: Rep_461_c_18_28
Type: CAZyme
Location: 43013 - 45325 (+)
Type: CAZyme
Location: 43013 - 45325 (+)
Gene ID: Rep_461_c_18_29
Type: pfam
Location: 45421 - 46473 (+)
Type: pfam
Location: 45421 - 46473 (+)
Gene ID: Rep_461_c_18_30
Type: TC
Location: 46541 - 49573 (+)
Type: TC
Location: 46541 - 49573 (+)
Gene ID: Rep_461_c_18_31
Type: pfam
Location: 49662 - 50933 (+)
Type: pfam
Location: 49662 - 50933 (+)
Gene ID: Rep_461_c_18_32
Type: CAZyme
Location: 51075 - 53342 (-)
Type: CAZyme
Location: 51075 - 53342 (-)
Gene ID: Rep_461_c_18_33
Type: CAZyme
Location: 53361 - 54494 (-)
Type: CAZyme
Location: 53361 - 54494 (-)
Gene ID: Rep_461_c_18_34
Type: CAZyme
Location: 54551 - 56491 (-)
Type: CAZyme
Location: 54551 - 56491 (-)
Gene ID: Rep_461_c_18_35
Type: CAZyme
Location: 56538 - 57986 (-)
Type: CAZyme
Location: 56538 - 57986 (-)
Gene ID: Rep_461_c_18_36
Type: CAZyme
Location: 58024 - 60000 (-)
Type: CAZyme
Location: 58024 - 60000 (-)
Gene ID: Rep_461_c_18_37
Type: pfam
Location: 60123 - 60881 (-)
Type: pfam
Location: 60123 - 60881 (-)
Gene ID: Rep_461_c_18_38
Type: pfam
Location: 60901 - 62817 (-)
Type: pfam
Location: 60901 - 62817 (-)
Gene ID: Rep_461_c_18_39
Type: TC
Location: 62833 - 66270 (-)
Type: TC
Location: 62833 - 66270 (-)
Gene ID: Rep_461_c_18_40
Type: STP
Location: 66403 - 67428 (-)
Type: STP
Location: 66403 - 67428 (-)
Gene ID: Rep_461_c_18_41
Type: TF
Location: 67590 - 68201 (-)
Type: TF
Location: 67590 - 68201 (-)
Gene ID: Rep_461_c_18_42
Type: TC
Location: 68425 - 69660 (-)
Type: TC
Location: 68425 - 69660 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.