Cluster: Rep_461_CGC64
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate: pectin/galactan
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_18 | Rep_461_c_18_5 | 3662 | 5548 | - | GH13_46 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_6 | 5642 | 6745 | - | GH53 |
| pfam | Rep_461_c_18 | Rep_461_c_18_7 | 6841 | 8313 | - | SusF_SusE | SusF_N |
| pfam | Rep_461_c_18 | Rep_461_c_18_8 | 8350 | 9516 | - | SusE | SusF_SusE |
| TC | Rep_461_c_18 | Rep_461_c_18_9 | 9557 | 11233 | - | 8.A.46.1.1 |
| TC | Rep_461_c_18 | Rep_461_c_18_10 | 11254 | 14286 | - | 1.B.14.6.1 |
| pfam | Rep_461_c_18 | Rep_461_c_18_11 | 15534 | 15890 | + | AAA-ATPase_like |
| pfam | Rep_461_c_18 | Rep_461_c_18_12 | 15956 | 16510 | + | AAA-ATPase_like |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_13 | 16609 | 19080 | - | GH2 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_14 | 19090 | 20163 | - | GH53 |
| pfam | Rep_461_c_18 | Rep_461_c_18_15 | 20176 | 21894 | - | SusE | DUF5111 | DUF5114 |
| TC | Rep_461_c_18 | Rep_461_c_18_16 | 21906 | 23480 | - | 8.A.46.1.1 |
| TC | Rep_461_c_18 | Rep_461_c_18_17 | 23510 | 26479 | - | 1.B.14.6.1 |
| CAZyme | Rep_461_c_18 | Rep_461_c_18_18 | 26507 | 29083 | - | GH147 |
Gene ID: Rep_461_c_18_5
Type: CAZyme
Location: 3662 - 5548 (-)
Type: CAZyme
Location: 3662 - 5548 (-)
Gene ID: Rep_461_c_18_6
Type: CAZyme
Location: 5642 - 6745 (-)
Type: CAZyme
Location: 5642 - 6745 (-)
Gene ID: Rep_461_c_18_7
Type: pfam
Location: 6841 - 8313 (-)
Type: pfam
Location: 6841 - 8313 (-)
Gene ID: Rep_461_c_18_8
Type: pfam
Location: 8350 - 9516 (-)
Type: pfam
Location: 8350 - 9516 (-)
Gene ID: Rep_461_c_18_9
Type: TC
Location: 9557 - 11233 (-)
Type: TC
Location: 9557 - 11233 (-)
Gene ID: Rep_461_c_18_10
Type: TC
Location: 11254 - 14286 (-)
Type: TC
Location: 11254 - 14286 (-)
Gene ID: Rep_461_c_18_11
Type: pfam
Location: 15534 - 15890 (+)
Type: pfam
Location: 15534 - 15890 (+)
Gene ID: Rep_461_c_18_12
Type: pfam
Location: 15956 - 16510 (+)
Type: pfam
Location: 15956 - 16510 (+)
Gene ID: Rep_461_c_18_13
Type: CAZyme
Location: 16609 - 19080 (-)
Type: CAZyme
Location: 16609 - 19080 (-)
Gene ID: Rep_461_c_18_14
Type: CAZyme
Location: 19090 - 20163 (-)
Type: CAZyme
Location: 19090 - 20163 (-)
Gene ID: Rep_461_c_18_15
Type: pfam
Location: 20176 - 21894 (-)
Type: pfam
Location: 20176 - 21894 (-)
Gene ID: Rep_461_c_18_16
Type: TC
Location: 21906 - 23480 (-)
Type: TC
Location: 21906 - 23480 (-)
Gene ID: Rep_461_c_18_17
Type: TC
Location: 23510 - 26479 (-)
Type: TC
Location: 23510 - 26479 (-)
Gene ID: Rep_461_c_18_18
Type: CAZyme
Location: 26507 - 29083 (-)
Type: CAZyme
Location: 26507 - 29083 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_18_5 | vegan > omnivore | 1.00163 | 0.00625 |
| Rep_461_c_18_5 | vegetarian > omnivore | 1.44051 | 0.00038 |
| Rep_461_c_18_6 | vegan > omnivore | 1.05511 | 0.00625 |
| Rep_461_c_18_6 | vegetarian > omnivore | 1.02096 | 0.00038 |