Cluster: Rep_461_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_0 | Rep_461_c_0_166 | 207662 | 209428 | - | PL1_2 |
| TF | Rep_461_c_0 | Rep_461_c_0_167 | 209579 | 210142 | + | GerE |
| STP | Rep_461_c_0 | Rep_461_c_0_168 | 210427 | 211599 | + | FecR |
| TC | Rep_461_c_0 | Rep_461_c_0_169 | 211616 | 214972 | + | 1.B.14.6.1 |
| TC | Rep_461_c_0 | Rep_461_c_0_170 | 214992 | 216443 | + | 8.A.46.3.2 |
Gene ID: Rep_461_c_0_166
Type: CAZyme
Location: 207662 - 209428 (-)
Type: CAZyme
Location: 207662 - 209428 (-)
Gene ID: Rep_461_c_0_167
Type: TF
Location: 209579 - 210142 (+)
Type: TF
Location: 209579 - 210142 (+)
Gene ID: Rep_461_c_0_168
Type: STP
Location: 210427 - 211599 (+)
Type: STP
Location: 210427 - 211599 (+)
Gene ID: Rep_461_c_0_169
Type: TC
Location: 211616 - 214972 (+)
Type: TC
Location: 211616 - 214972 (+)
Gene ID: Rep_461_c_0_170
Type: TC
Location: 214992 - 216443 (+)
Type: TC
Location: 214992 - 216443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_0_168 | vegan > omnivore | 2.15418 | 0.00625 |
| Rep_461_c_0_168 | vegetarian > omnivore | 2.00838 | 0.00038 |