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Cluster: Rep_461_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_14 Rep_461_c_14_73 108191 109423 + 3.A.1.125.1
CAZyme Rep_461_c_14 Rep_461_c_14_74 109860 113363 + GH106
TF Rep_461_c_14 Rep_461_c_14_75 113444 117499 - HTH_AraC
TC Rep_461_c_14 Rep_461_c_14_76 118016 121090 + 1.B.14.6.1
TC Rep_461_c_14 Rep_461_c_14_77 121111 122835 + 8.A.46.1.6
CAZyme Rep_461_c_14 Rep_461_c_14_78 123028 125106 + PL8_3
TC Rep_461_c_14 Rep_461_c_14_79 125155 129207 - 2.A.21.9.2
NULL(UNKNOWN) Rep_461_c_14 Rep_461_c_14_80 129304 129432 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_14 Rep_461_c_14_81 129449 132124 + CBM67 | GH78
TC Rep_461_c_14 Rep_461_c_14_82 132689 135850 + 1.B.14.6.1
TC Rep_461_c_14 Rep_461_c_14_83 135863 137551 + 8.A.46.1.3
NULL(UNKNOWN) Rep_461_c_14 Rep_461_c_14_84 137585 137962 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_14 Rep_461_c_14_85 138036 139457 + GH28
CAZyme Rep_461_c_14 Rep_461_c_14_86 139594 142293 + GH2
CAZyme Rep_461_c_14 Rep_461_c_14_87 142290 144887 + GH2
CAZyme Rep_461_c_14 Rep_461_c_14_88 144910 146100 + GH88
CAZyme Rep_461_c_14 Rep_461_c_14_89 146113 147576 + GH28
CAZyme Rep_461_c_14 Rep_461_c_14_90 147587 152347 + CBM67 | GH78 | PL8_3
TF Rep_461_c_14 Rep_461_c_14_91 152463 153236 + LytTR
TC Rep_461_c_14 Rep_461_c_14_92 153249 154253 + 9.B.33.1.2
Gene ID: Rep_461_c_14_73
Type: TC
Location: 108191 - 109423 (+)
Gene ID: Rep_461_c_14_74
Type: CAZyme
Location: 109860 - 113363 (+)
Gene ID: Rep_461_c_14_75
Type: TF
Location: 113444 - 117499 (-)
Gene ID: Rep_461_c_14_76
Type: TC
Location: 118016 - 121090 (+)
Gene ID: Rep_461_c_14_77
Type: TC
Location: 121111 - 122835 (+)
Gene ID: Rep_461_c_14_78
Type: CAZyme
Location: 123028 - 125106 (+)
Gene ID: Rep_461_c_14_79
Type: TC
Location: 125155 - 129207 (-)
Gene ID: Rep_461_c_14_80
Type:
Location: 129304 - 129432 (+)
Gene ID: Rep_461_c_14_81
Type: CAZyme
Location: 129449 - 132124 (+)
Gene ID: Rep_461_c_14_82
Type: TC
Location: 132689 - 135850 (+)
Gene ID: Rep_461_c_14_83
Type: TC
Location: 135863 - 137551 (+)
Gene ID: Rep_461_c_14_84
Type:
Location: 137585 - 137962 (+)
Gene ID: Rep_461_c_14_85
Type: CAZyme
Location: 138036 - 139457 (+)
Gene ID: Rep_461_c_14_86
Type: CAZyme
Location: 139594 - 142293 (+)
Gene ID: Rep_461_c_14_87
Type: CAZyme
Location: 142290 - 144887 (+)
Gene ID: Rep_461_c_14_88
Type: CAZyme
Location: 144910 - 146100 (+)
Gene ID: Rep_461_c_14_89
Type: CAZyme
Location: 146113 - 147576 (+)
Gene ID: Rep_461_c_14_90
Type: CAZyme
Location: 147587 - 152347 (+)
Gene ID: Rep_461_c_14_91
Type: TF
Location: 152463 - 153236 (+)
Gene ID: Rep_461_c_14_92
Type: TC
Location: 153249 - 154253 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_14_87 vegetarian > omnivore 1.26988 0.00038
Rep_461_c_14_87 vegan > omnivore 2.70406 0.00625
Rep_461_c_14_88 vegetarian > omnivore 2.53373 0.00038
Rep_461_c_14_88 vegan > omnivore 3.47659 0.00625
Rep_461_c_14_89 vegetarian > omnivore 2.00864 0.00038
Rep_461_c_14_89 vegan > omnivore 3.15121 0.00625
Rep_461_c_14_90 vegetarian > omnivore 1.94037 0.00038
Rep_461_c_14_90 vegan > omnivore 2.81474 0.00625

🧭 Explore Read Mapping of CGC

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