Cluster: Rep_461_CGC55
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_14 | Rep_461_c_14_15 | 24313 | 27195 | - | GH2 |
| TC | Rep_461_c_14 | Rep_461_c_14_16 | 27547 | 30678 | + | 1.B.14.6.1 |
| pfam | Rep_461_c_14 | Rep_461_c_14_17 | 30699 | 32297 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_461_c_14 | Rep_461_c_14_18 | 32547 | 35096 | + | GH28 | GH43_24 |
| TF | Rep_461_c_14 | Rep_461_c_14_19 | 35194 | 39462 | + | HTH_AraC |
| CAZyme | Rep_461_c_14 | Rep_461_c_14_20 | 39498 | 42095 | - | GH2 |
| TC | Rep_461_c_14 | Rep_461_c_14_21 | 42337 | 43551 | - | 3.B.1.1.4 |
Gene ID: Rep_461_c_14_15
Type: CAZyme
Location: 24313 - 27195 (-)
Type: CAZyme
Location: 24313 - 27195 (-)
Gene ID: Rep_461_c_14_16
Type: TC
Location: 27547 - 30678 (+)
Type: TC
Location: 27547 - 30678 (+)
Gene ID: Rep_461_c_14_17
Type: pfam
Location: 30699 - 32297 (+)
Type: pfam
Location: 30699 - 32297 (+)
Gene ID: Rep_461_c_14_18
Type: CAZyme
Location: 32547 - 35096 (+)
Type: CAZyme
Location: 32547 - 35096 (+)
Gene ID: Rep_461_c_14_19
Type: TF
Location: 35194 - 39462 (+)
Type: TF
Location: 35194 - 39462 (+)
Gene ID: Rep_461_c_14_20
Type: CAZyme
Location: 39498 - 42095 (-)
Type: CAZyme
Location: 39498 - 42095 (-)
Gene ID: Rep_461_c_14_21
Type: TC
Location: 42337 - 43551 (-)
Type: TC
Location: 42337 - 43551 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_14_18 | vegan > omnivore | 1.86670 | 0.00625 |
| Rep_461_c_14_18 | vegetarian > omnivore | 1.23061 | 0.00038 |
| Rep_461_c_14_20 | vegetarian > omnivore | 1.56264 | 0.00038 |
| Rep_461_c_14_21 | vegetarian > omnivore | 1.08790 | 0.00038 |