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Cluster: Rep_461_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_13 Rep_461_c_13_16 22946 24067 + 9.A.25.1.1
pfam Rep_461_c_13 Rep_461_c_13_17 24070 25074 + Metallophos
TC Rep_461_c_13 Rep_461_c_13_18 25464 28682 + 1.B.14.6.1
pfam Rep_461_c_13 Rep_461_c_13_19 28704 30284 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_461_c_13 Rep_461_c_13_20 30315 31754 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_13 Rep_461_c_13_21 31880 33235 + GH16_3
CAZyme Rep_461_c_13 Rep_461_c_13_22 33308 35560 + GH3
pfam Rep_461_c_13 Rep_461_c_13_23 35661 36941 - Enolase_C | Enolase_N | MR_MLE_C
TC Rep_461_c_13 Rep_461_c_13_24 37030 37401 - 1.A.43.1.1
CAZyme Rep_461_c_13 Rep_461_c_13_25 37626 39782 + GH97
Gene ID: Rep_461_c_13_16
Type: TC
Location: 22946 - 24067 (+)
Gene ID: Rep_461_c_13_17
Type: pfam
Location: 24070 - 25074 (+)
Gene ID: Rep_461_c_13_18
Type: TC
Location: 25464 - 28682 (+)
Gene ID: Rep_461_c_13_19
Type: pfam
Location: 28704 - 30284 (+)
Gene ID: Rep_461_c_13_20
Type:
Location: 30315 - 31754 (+)
Gene ID: Rep_461_c_13_21
Type: CAZyme
Location: 31880 - 33235 (+)
Gene ID: Rep_461_c_13_22
Type: CAZyme
Location: 33308 - 35560 (+)
Gene ID: Rep_461_c_13_23
Type: pfam
Location: 35661 - 36941 (-)
Gene ID: Rep_461_c_13_24
Type: TC
Location: 37030 - 37401 (-)
Gene ID: Rep_461_c_13_25
Type: CAZyme
Location: 37626 - 39782 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_13_18 vegetarian > omnivore 1.09528 0.00038
Rep_461_c_13_19 vegan > omnivore 1.02470 0.00625

🧭 Explore Read Mapping of CGC

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