Cluster: Rep_461_CGC47
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00275
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_11 | Rep_461_c_11_44 | 49701 | 51461 | - | CBM32 | GH43_28 |
| sulfatase | Rep_461_c_11 | Rep_461_c_11_45 | 51458 | 53026 | - | S1_11 |
| pfam | Rep_461_c_11 | Rep_461_c_11_46 | 53050 | 53904 | - | Exo_endo_phos |
| CAZyme | Rep_461_c_11 | Rep_461_c_11_47 | 53917 | 55224 | - | GH144 |
| CAZyme | Rep_461_c_11 | Rep_461_c_11_48 | 55238 | 56896 | - | GH144 |
| pfam | Rep_461_c_11 | Rep_461_c_11_49 | 56902 | 57735 | - | Laminin_G_3 |
| pfam | Rep_461_c_11 | Rep_461_c_11_50 | 57753 | 59270 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_11 | Rep_461_c_11_51 | 59303 | 62278 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_461_c_11 | Rep_461_c_11_52 | 62482 | 62721 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_11 | Rep_461_c_11_53 | 62789 | 65176 | - | GH3 |
| STP | Rep_461_c_11 | Rep_461_c_11_54 | 65348 | 68185 | - | Y_Y_Y |
| TC | Rep_461_c_11 | Rep_461_c_11_55 | 68315 | 69988 | - | 9.B.174.1.1 |
Gene ID: Rep_461_c_11_44
Type: CAZyme
Location: 49701 - 51461 (-)
Type: CAZyme
Location: 49701 - 51461 (-)
Gene ID: Rep_461_c_11_45
Type: sulfatase
Location: 51458 - 53026 (-)
Type: sulfatase
Location: 51458 - 53026 (-)
Gene ID: Rep_461_c_11_46
Type: pfam
Location: 53050 - 53904 (-)
Type: pfam
Location: 53050 - 53904 (-)
Gene ID: Rep_461_c_11_47
Type: CAZyme
Location: 53917 - 55224 (-)
Type: CAZyme
Location: 53917 - 55224 (-)
Gene ID: Rep_461_c_11_48
Type: CAZyme
Location: 55238 - 56896 (-)
Type: CAZyme
Location: 55238 - 56896 (-)
Gene ID: Rep_461_c_11_49
Type: pfam
Location: 56902 - 57735 (-)
Type: pfam
Location: 56902 - 57735 (-)
Gene ID: Rep_461_c_11_50
Type: pfam
Location: 57753 - 59270 (-)
Type: pfam
Location: 57753 - 59270 (-)
Gene ID: Rep_461_c_11_51
Type: TC
Location: 59303 - 62278 (-)
Type: TC
Location: 59303 - 62278 (-)
Gene ID: Rep_461_c_11_52
Type:
Location: 62482 - 62721 (+)
Type:
Location: 62482 - 62721 (+)
Gene ID: Rep_461_c_11_53
Type: CAZyme
Location: 62789 - 65176 (-)
Type: CAZyme
Location: 62789 - 65176 (-)
Gene ID: Rep_461_c_11_54
Type: STP
Location: 65348 - 68185 (-)
Type: STP
Location: 65348 - 68185 (-)
Gene ID: Rep_461_c_11_55
Type: TC
Location: 68315 - 69988 (-)
Type: TC
Location: 68315 - 69988 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_11_44 | vegan > omnivore | 1.26314 | 0.00625 |
| Rep_461_c_11_47 | vegan > omnivore | 1.03682 | 0.00414 |
| Rep_461_c_11_51 | vegan > omnivore | 1.14376 | 0.00625 |