Cluster: Rep_461_CGC45
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate: xylan/beta-glucan
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00116
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_10 | Rep_461_c_10_64 | 94304 | 97447 | + | 1.B.14.6.1 |
| pfam | Rep_461_c_10 | Rep_461_c_10_65 | 97458 | 99341 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_10 | Rep_461_c_10_66 | 99374 | 102199 | + | 1.B.14.6.1 |
| pfam | Rep_461_c_10 | Rep_461_c_10_67 | 102227 | 103987 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_461_c_10 | Rep_461_c_10_68 | 104020 | 105054 | + | BT_3987-like_N | DUF5627 |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_69 | 105089 | 107302 | + | GH10 |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_70 | 107319 | 108962 | + | GH30_8 |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_71 | 108990 | 111524 | + | GH115 |
Gene ID: Rep_461_c_10_64
Type: TC
Location: 94304 - 97447 (+)
Type: TC
Location: 94304 - 97447 (+)
Gene ID: Rep_461_c_10_65
Type: pfam
Location: 97458 - 99341 (+)
Type: pfam
Location: 97458 - 99341 (+)
Gene ID: Rep_461_c_10_66
Type: TC
Location: 99374 - 102199 (+)
Type: TC
Location: 99374 - 102199 (+)
Gene ID: Rep_461_c_10_67
Type: pfam
Location: 102227 - 103987 (+)
Type: pfam
Location: 102227 - 103987 (+)
Gene ID: Rep_461_c_10_68
Type: pfam
Location: 104020 - 105054 (+)
Type: pfam
Location: 104020 - 105054 (+)
Gene ID: Rep_461_c_10_69
Type: CAZyme
Location: 105089 - 107302 (+)
Type: CAZyme
Location: 105089 - 107302 (+)
Gene ID: Rep_461_c_10_70
Type: CAZyme
Location: 107319 - 108962 (+)
Type: CAZyme
Location: 107319 - 108962 (+)
Gene ID: Rep_461_c_10_71
Type: CAZyme
Location: 108990 - 111524 (+)
Type: CAZyme
Location: 108990 - 111524 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_10_65 | vegan > omnivore | 1.51488 | 0.00625 |
| Rep_461_c_10_65 | vegetarian > omnivore | 1.16283 | 0.00038 |
| Rep_461_c_10_66 | vegan > omnivore | 1.00840 | 0.00625 |
| Rep_461_c_10_67 | vegan > omnivore | 2.79041 | 0.00625 |
| Rep_461_c_10_67 | vegetarian > omnivore | 2.65543 | 0.00038 |
| Rep_461_c_10_68 | vegan > omnivore | 2.49469 | 0.00625 |
| Rep_461_c_10_68 | vegetarian > omnivore | 2.32280 | 0.00038 |
| Rep_461_c_10_70 | vegan > omnivore | 2.15732 | 0.00625 |
| Rep_461_c_10_70 | vegetarian > omnivore | 1.71074 | 0.00038 |