Cluster: Rep_461_CGC44
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00297
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_10 | Rep_461_c_10_23 | 32372 | 33352 | - | GH43_29 |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_24 | 33358 | 35292 | - | GH51_2 |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_25 | 35367 | 36854 | - | GH43_4 |
| TF | Rep_461_c_10 | Rep_461_c_10_26 | 36968 | 41287 | + | HTH_AraC |
| pfam | Rep_461_c_10 | Rep_461_c_10_27 | 41654 | 43498 | + | Laminin_G_3 |
| TC | Rep_461_c_10 | Rep_461_c_10_28 | 43525 | 46638 | + | 1.B.14.6.1 |
| pfam | Rep_461_c_10 | Rep_461_c_10_29 | 46643 | 48397 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_10 | Rep_461_c_10_30 | 48419 | 51628 | + | 1.B.14.6.2 |
| pfam | Rep_461_c_10 | Rep_461_c_10_31 | 51647 | 53428 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_461_c_10 | Rep_461_c_10_32 | 53458 | 53904 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_10 | Rep_461_c_10_33 | 54006 | 55919 | + | GH43_4 |
| sulfatase | Rep_461_c_10 | Rep_461_c_10_34 | 56196 | 57335 | + | S1_22 |
| TC | Rep_461_c_10 | Rep_461_c_10_35 | 57361 | 59055 | + | 2.A.21.3.19 |
Gene ID: Rep_461_c_10_23
Type: CAZyme
Location: 32372 - 33352 (-)
Type: CAZyme
Location: 32372 - 33352 (-)
Gene ID: Rep_461_c_10_24
Type: CAZyme
Location: 33358 - 35292 (-)
Type: CAZyme
Location: 33358 - 35292 (-)
Gene ID: Rep_461_c_10_25
Type: CAZyme
Location: 35367 - 36854 (-)
Type: CAZyme
Location: 35367 - 36854 (-)
Gene ID: Rep_461_c_10_26
Type: TF
Location: 36968 - 41287 (+)
Type: TF
Location: 36968 - 41287 (+)
Gene ID: Rep_461_c_10_27
Type: pfam
Location: 41654 - 43498 (+)
Type: pfam
Location: 41654 - 43498 (+)
Gene ID: Rep_461_c_10_28
Type: TC
Location: 43525 - 46638 (+)
Type: TC
Location: 43525 - 46638 (+)
Gene ID: Rep_461_c_10_29
Type: pfam
Location: 46643 - 48397 (+)
Type: pfam
Location: 46643 - 48397 (+)
Gene ID: Rep_461_c_10_30
Type: TC
Location: 48419 - 51628 (+)
Type: TC
Location: 48419 - 51628 (+)
Gene ID: Rep_461_c_10_31
Type: pfam
Location: 51647 - 53428 (+)
Type: pfam
Location: 51647 - 53428 (+)
Gene ID: Rep_461_c_10_32
Type:
Location: 53458 - 53904 (+)
Type:
Location: 53458 - 53904 (+)
Gene ID: Rep_461_c_10_33
Type: CAZyme
Location: 54006 - 55919 (+)
Type: CAZyme
Location: 54006 - 55919 (+)
Gene ID: Rep_461_c_10_34
Type: sulfatase
Location: 56196 - 57335 (+)
Type: sulfatase
Location: 56196 - 57335 (+)
Gene ID: Rep_461_c_10_35
Type: TC
Location: 57361 - 59055 (+)
Type: TC
Location: 57361 - 59055 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_10_23 | vegan > omnivore | 1.82768 | 0.00625 |